Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5486

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209798 to 210668 13853 mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211057 to 213286 13854 mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213824 to 214622 13855

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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210,672 - -0.4
210,678 + -1.1
210,686 - 0.1
210,726 + 0.2
211,397 + 13854 mRNA_5486 0.15 2.1
211,996 - 13854 mRNA_5486 0.42 0.3
211,999 - 13854 mRNA_5486 0.42 1.8
212,009 + 13854 mRNA_5486 0.43 -1.4
212,251 - 13854 mRNA_5486 0.54 -0.1
212,622 + 13854 mRNA_5486 0.70 -2.1
212,626 + 13854 mRNA_5486 0.70 -0.3
212,710 - 13854 mRNA_5486 0.74 -1.2
212,781 - 13854 mRNA_5486 0.77 -2.7
212,811 - 13854 mRNA_5486 0.79 -0.8
212,811 - 13854 mRNA_5486 0.79 -0.2
213,057 + 13854 mRNA_5486 0.90 0.3
213,510 - 2.1
213,641 + -3.0
213,658 - 0.2
214,062 - 13855 mRNA_5487 0.30 -0.0
214,102 + 13855 mRNA_5487 0.35 -0.7
214,135 + 13855 mRNA_5487 0.39 -1.6
214,201 + 13855 mRNA_5487 0.47 -0.5