Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5448

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113720 to 116134 13815 mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116614 to 117202 13816 mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117409 to 118509 13817

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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115,862 + 13815 mRNA_5447 0.89 2.3
115,997 - -1.4
116,016 + -0.7
116,034 - -1.3
116,041 + -0.4
116,056 - 0.4
116,083 + -0.8
116,203 - -0.0
116,208 - 0.3
116,619 + 0.8
116,633 + -1.1
116,659 - -0.6
116,803 - 13816 mRNA_5448 0.32 -1.7
116,803 + 13816 mRNA_5448 0.32 0.1
116,803 - 13816 mRNA_5448 0.32 0.8
116,894 + 13816 mRNA_5448 0.48 -1.5
116,926 + 13816 mRNA_5448 0.53 -1.2
117,073 + 13816 mRNA_5448 0.78 -0.4
117,505 - -0.6
117,818 + 13817 mRNA_5449 0.37 1.3
117,966 + 13817 mRNA_5449 0.51 1.2
117,972 + 13817 mRNA_5449 0.51 0.4
118,025 - 13817 mRNA_5449 0.56 0.8
118,074 - 13817 mRNA_5449 0.60 0.4
118,099 + 13817 mRNA_5449 0.63 -3.1