Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5396

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763 mRNA_5396: 13764 - KOG4567 GTPase-activating protein, at 2092 to 5786 13764 mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6124 to 7635 13765

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,103 - -0.4
1,110 + -0.4
1,245 - 13763 mRNA_5395 0.11 -2.0
1,260 - 13763 mRNA_5395 0.13 -2.6
1,376 - 13763 mRNA_5395 0.27 -2.2
1,438 + 13763 mRNA_5395 0.34 -3.0
1,438 + 13763 mRNA_5395 0.34 -1.5
1,438 + 13763 mRNA_5395 0.34 0.5
1,523 + 13763 mRNA_5395 0.44 -0.1
1,528 - 13763 mRNA_5395 0.45 0.4
1,533 + 13763 mRNA_5395 0.45 1.0
1,538 + 13763 mRNA_5395 0.46 -3.2
1,538 - 13763 mRNA_5395 0.46 0.0
1,556 + 13763 mRNA_5395 0.48 -2.4
1,639 + 13763 mRNA_5395 0.58 -1.4
1,854 - 13763 mRNA_5395 0.83 -1.4
1,855 - 13763 mRNA_5395 0.83 -2.3
1,887 - 13763 mRNA_5395 0.87 0.1
1,908 - 13763 mRNA_5395 0.89 0.4
2,000 - -1.7
2,009 + -1.5
2,093 + -1.2
2,125 - 0.7
2,156 - -1.1
2,162 + -2.1
2,397 + -1.4
2,412 + -0.7
2,570 + 13764 mRNA_5396 0.13 -1.8
2,586 + 13764 mRNA_5396 0.13 0.1
2,594 - 13764 mRNA_5396 0.14 -1.1
2,597 + 13764 mRNA_5396 0.14 -3.0
2,661 + 13764 mRNA_5396 0.15 -0.1
2,773 + 13764 mRNA_5396 0.18 -1.3
2,847 - 13764 mRNA_5396 0.20 0.7
2,895 - 13764 mRNA_5396 0.22 0.1
2,923 + 13764 mRNA_5396 0.22 -0.4
3,029 + 13764 mRNA_5396 0.25 -1.0
3,054 + 13764 mRNA_5396 0.26 0.3
3,088 + 13764 mRNA_5396 0.27 0.5
3,167 + 13764 mRNA_5396 0.29 -1.2
3,171 + 13764 mRNA_5396 0.29 -0.5
3,175 + 13764 mRNA_5396 0.29 -1.0
3,216 + 13764 mRNA_5396 0.30 -1.7
3,230 + 13764 mRNA_5396 0.31 0.2
3,295 - 13764 mRNA_5396 0.33 0.6
3,301 + 13764 mRNA_5396 0.33 0.2
3,304 - 13764 mRNA_5396 0.33 -1.9
3,319 + 13764 mRNA_5396 0.33 -0.4
3,449 - 13764 mRNA_5396 0.37 0.2
3,457 - 13764 mRNA_5396 0.37 -1.3
3,584 + 13764 mRNA_5396 0.40 -0.4
3,693 - 13764 mRNA_5396 0.43 -0.8
3,693 - 13764 mRNA_5396 0.43 -2.3
3,699 + 13764 mRNA_5396 0.43 0.8
3,743 + 13764 mRNA_5396 0.45 -2.3
3,798 + 13764 mRNA_5396 0.46 -2.0
3,857 - 13764 mRNA_5396 0.48 -1.6
3,863 - 13764 mRNA_5396 0.48 0.0
3,870 + 13764 mRNA_5396 0.48 -1.3
3,872 - 13764 mRNA_5396 0.48 -0.6
3,875 + 13764 mRNA_5396 0.48 -0.4
3,878 + 13764 mRNA_5396 0.48 0.1
3,897 + 13764 mRNA_5396 0.49 -0.5
3,927 + 13764 mRNA_5396 0.50 -0.1
3,930 - 13764 mRNA_5396 0.50 0.4
4,056 + 13764 mRNA_5396 0.53 0.3
4,164 - 13764 mRNA_5396 0.56 -2.1
4,184 - 13764 mRNA_5396 0.57 -1.6
4,186 + 13764 mRNA_5396 0.57 -2.0
4,191 + 13764 mRNA_5396 0.57 -3.7
4,377 - 13764 mRNA_5396 0.62 -0.1
4,392 + 13764 mRNA_5396 0.62 0.8
4,465 - 13764 mRNA_5396 0.64 1.4
4,577 - 13764 mRNA_5396 0.67 0.6
4,656 - 13764 mRNA_5396 0.69 -0.3
4,693 + 13764 mRNA_5396 0.70 -0.2
4,707 - 13764 mRNA_5396 0.71 1.0
4,755 + 13764 mRNA_5396 0.72 -1.7
4,762 + 13764 mRNA_5396 0.72 -0.0
4,794 + 13764 mRNA_5396 0.73 -0.5
4,888 - 13764 mRNA_5396 0.76 0.5
4,909 - 13764 mRNA_5396 0.76 -0.8
4,913 + 13764 mRNA_5396 0.76 -1.7
4,984 + 13764 mRNA_5396 0.78 -0.5
5,076 + 13764 mRNA_5396 0.81 -1.5
5,203 - 13764 mRNA_5396 0.84 1.0
5,351 - 13764 mRNA_5396 0.88 -0.5
5,370 - 13764 mRNA_5396 0.89 -0.4
5,384 - 13764 mRNA_5396 0.89 -0.5
5,504 + -0.7
5,508 + -1.0
5,520 - -0.0
5,614 + -2.9
5,614 + 0.4
5,635 + -0.6
5,647 + -2.2
5,679 + -0.3
5,793 - 1.3
5,794 + -1.3
5,795 - -0.3
5,797 - 0.4
5,801 + 1.7
5,969 + -0.1
5,970 + 0.9
6,077 - 0.3
6,196 + -0.0
6,223 - -1.7
6,240 - 0.4
6,484 + 13765 mRNA_5397 0.24 -2.6
6,575 - 13765 mRNA_5397 0.30 1.0
6,621 + 13765 mRNA_5397 0.33 -0.5
6,632 - 13765 mRNA_5397 0.34 0.6
6,685 - 13765 mRNA_5397 0.37 0.7