Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4870

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4869: 13237 - K03364 CDH1 cell division cycle 20-like protein 1, cofactor of APC complex, at 1180583 to 1182754 13237 mRNA_4870: 13238 - KOG2533 Permease of the major facilitator superfamily, at 1183221 to 1185751 13238 mRNA_4871: 13239 - K03777 dld D-lactate dehydrogenase, at 1185921 to 1188048 13239

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,182,340 - 13237 mRNA_4869 0.81 0.7
1,182,722 - -3.7
1,183,868 + 13238 mRNA_4870 0.26 1.0
1,183,925 - 13238 mRNA_4870 0.28 -1.2
1,184,331 - 13238 mRNA_4870 0.44 -1.0
1,184,342 + 13238 mRNA_4870 0.44 1.1
1,184,349 - 13238 mRNA_4870 0.45 -0.6
1,184,362 + 13238 mRNA_4870 0.45 1.0
1,185,075 + 13238 mRNA_4870 0.73 -3.2
1,185,332 + 13238 mRNA_4870 0.83 0.3
1,185,336 - 13238 mRNA_4870 0.84 0.6
1,185,339 - 13238 mRNA_4870 0.84 -1.2
1,185,343 - 13238 mRNA_4870 0.84 1.1
1,185,353 - 13238 mRNA_4870 0.84 0.7
1,185,377 - 13238 mRNA_4870 0.85 -0.9
1,185,488 + 13238 mRNA_4870 0.90 1.3
1,185,494 - 13238 mRNA_4870 0.90 -2.1
1,185,497 + 13238 mRNA_4870 0.90 0.6
1,185,631 - 1.6
1,185,638 - -0.1
1,185,644 + -1.2
1,185,645 + -1.4
1,185,649 + -2.0
1,185,669 + 0.9
1,185,806 - 0.7
1,185,816 - -0.4
1,185,818 - 0.9
1,185,823 + -0.5
1,185,827 - 0.0
1,185,828 + -0.2
1,185,830 + 0.3
1,185,832 + 0.4
1,185,842 + 0.2
1,185,844 - -1.5
1,185,849 + 0.4
1,185,850 + 0.1
1,185,851 + -0.6
1,185,859 - -0.9
1,185,859 - -0.1
1,185,860 + -1.6
1,185,864 + -0.1
1,185,866 - -0.1
1,185,866 - 0.3
1,185,866 + -0.6
1,185,881 + -2.1
1,185,882 + -0.3
1,185,883 + -1.7
1,185,888 - -1.7
1,185,896 + -1.1
1,185,898 - 0.3
1,185,899 + -1.6
1,185,903 + -1.5
1,185,905 + -1.4
1,185,910 + -2.2
1,185,919 + -1.3
1,185,927 - 0.1
1,186,034 + -0.3
1,186,035 + -1.2
1,186,045 + -1.1
1,186,260 - 13239 mRNA_4871 0.16 0.6
1,186,300 + 13239 mRNA_4871 0.18 -1.0
1,186,330 + 13239 mRNA_4871 0.19 1.3
1,186,614 + 13239 mRNA_4871 0.33 -3.7
1,186,622 + 13239 mRNA_4871 0.33 -0.9