Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4729

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868902 to 870638 13096 mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870839 to 873938 13097 mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874263 to 876540 13098

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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870,449 - 13096 mRNA_4728 0.89 2.6
870,474 + 0.2
870,592 + 0.6
870,761 - -0.2
870,763 + -2.0
870,777 + -1.4
871,038 - 1.3
871,083 - -2.4
871,092 + -2.8
871,152 - 13097 mRNA_4729 0.10 -0.2
871,208 - 13097 mRNA_4729 0.12 -2.7
871,535 - 13097 mRNA_4729 0.22 1.0
871,808 - 13097 mRNA_4729 0.31 -1.3
871,810 + 13097 mRNA_4729 0.31 0.8
872,062 - 13097 mRNA_4729 0.39 -0.5
872,378 + 13097 mRNA_4729 0.50 -0.9
872,653 + 13097 mRNA_4729 0.59 -2.6
872,839 + 13097 mRNA_4729 0.65 -0.1
872,866 - 13097 mRNA_4729 0.65 1.1
872,956 + 13097 mRNA_4729 0.68 0.4
873,551 - 13097 mRNA_4729 0.87 -0.7
873,650 + -2.3
873,684 - -1.0
873,972 - -1.6
873,984 - 0.4