Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3275

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263216 to 265708 11642 mRNA_3275: 11643 - BLAST methyltransferase [Obba rivulosa], at 265766 to 267917 11643 mRNA_3276: 11644 - BLAST Nuclease PA3 [Grifola frondosa], at 268106 to 268881 11644

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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264,861 - 11642 mRNA_3274 0.66 0.1
264,899 - 11642 mRNA_3274 0.68 -0.2
264,950 - 11642 mRNA_3274 0.70 -2.1
265,311 - 11642 mRNA_3274 0.84 -0.1
265,430 + 11642 mRNA_3274 0.89 -0.0
265,455 - 11642 mRNA_3274 0.90 -0.1
265,468 + 0.7
265,536 + -0.0
265,537 - -0.4
265,549 + -0.1
265,549 + -2.9
265,649 - -0.8
265,655 - -0.8
265,658 + -0.6
265,658 + -0.6
265,666 - 0.6
265,685 - -0.3
265,689 + 0.0
265,700 - 1.2
265,705 + -0.5
265,786 - 0.2
265,818 + 0.1
265,821 + -2.0
265,824 - -0.3
265,826 + -0.3
265,827 + -0.2
265,828 + -0.7
265,835 + 0.1
265,835 + -0.4
265,836 - 0.4
265,839 - -0.9
265,839 - -0.4
265,841 + -0.2
265,845 + -2.8
265,852 + 1.2
265,853 - 0.4
265,853 - -2.3
265,855 - -1.5
265,856 + -1.9
265,856 + 0.4
265,856 - -1.8
265,866 + -0.1
265,867 + -0.3
265,868 - 0.2
265,871 - -1.2
265,872 - -2.7
265,873 + -2.2
265,874 - -0.3
265,874 + -1.4
265,875 - -0.3
265,876 - 0.1
265,878 - -1.2
265,879 - -2.9
265,881 - 0.4
265,882 - 0.2
265,883 + -0.0
265,883 + 0.5
265,889 - -1.0
265,889 - 0.2
265,892 + -2.5
265,893 + -0.2
265,893 - 0.1
265,898 - -1.8
265,899 - -0.0
265,899 + -0.4
265,901 + -0.6
265,902 + -0.2
265,907 - 0.4
265,907 - 0.1
265,910 - 0.4
265,934 - 0.9
265,947 - 0.7
265,949 - -0.7
265,949 - 0.7
265,952 - 0.4
265,952 - 0.4
265,955 + -0.6
265,956 + -1.2
265,956 + -0.2
265,969 + -0.1
265,969 + -2.7
265,983 - 11643 mRNA_3275 0.10 0.6
265,988 + 11643 mRNA_3275 0.10 -2.2
265,995 + 11643 mRNA_3275 0.11 0.2
266,013 - 11643 mRNA_3275 0.11 -0.9
266,027 - 11643 mRNA_3275 0.12 -2.2
266,051 - 11643 mRNA_3275 0.13 -0.1
266,053 - 11643 mRNA_3275 0.13 -0.3
266,062 - 11643 mRNA_3275 0.14 -1.6
266,156 + 11643 mRNA_3275 0.18 1.5
266,164 - 11643 mRNA_3275 0.18 -0.2
266,171 + 11643 mRNA_3275 0.19 0.1
266,174 - 11643 mRNA_3275 0.19 -0.5
266,201 - 11643 mRNA_3275 0.20 -0.3
266,209 - 11643 mRNA_3275 0.21 1.0
266,226 - 11643 mRNA_3275 0.21 -0.1
266,341 - 11643 mRNA_3275 0.27 -1.4
266,638 + 11643 mRNA_3275 0.41 -0.8
267,036 - 11643 mRNA_3275 0.59 -2.1
267,053 - 11643 mRNA_3275 0.60 -0.3
267,066 - 11643 mRNA_3275 0.60 -1.1
267,199 - 11643 mRNA_3275 0.67 0.6
267,485 - 11643 mRNA_3275 0.80 0.5
267,611 + 11643 mRNA_3275 0.86 0.7
267,679 - 11643 mRNA_3275 0.89 -1.2
267,679 - 11643 mRNA_3275 0.89 -0.7
267,805 - -0.1
268,219 - 11644 mRNA_3276 0.15 -0.1
268,350 + 11644 mRNA_3276 0.31 1.0
268,351 - 11644 mRNA_3276 0.32 -0.9
268,364 + 11644 mRNA_3276 0.33 0.3
268,486 - 11644 mRNA_3276 0.49 0.4
268,491 + 11644 mRNA_3276 0.50 -0.2
268,624 - 11644 mRNA_3276 0.67 1.2
268,798 + 11644 mRNA_3276 0.89 0.9
268,884 - -0.7
268,899 + 0.4
268,908 + -0.6
268,916 - -1.1
268,917 - -2.4