Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2871

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409148 to 410896 11238 mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411310 to 412108 11239 mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412487 to 414015 11240

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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410,368 - 11238 mRNA_2870 0.70 -3.5
410,524 + 11238 mRNA_2870 0.79 0.2
410,689 + 11238 mRNA_2870 0.88 -0.8
410,840 + -0.9
410,920 + -0.5
410,963 + 0.9
410,968 - -1.9
410,971 + -0.9
410,972 - 0.3
410,974 - 1.1
410,974 - 0.5
410,975 + 0.1
411,007 - -0.9
411,007 - -0.7
411,008 - -2.4
411,012 + -0.1
411,015 + -0.6
411,023 + -0.2
411,024 + -0.3
411,025 + 0.0
411,034 + 0.0
411,034 + -0.6
411,035 + 2.2
411,035 + -2.8
411,036 + -1.3
411,039 + 0.1
411,070 + -2.5
411,083 + -0.5
411,083 - -0.3
411,084 + -1.6
411,085 - -1.8
411,087 + -0.1
411,100 - 0.5
411,105 + -1.8
411,108 + -0.7
411,111 + 0.0
411,114 + -0.3
411,117 + -0.1
411,228 + -0.5
411,231 + 0.3
411,234 - -2.7
411,248 + 0.2
411,506 - 11239 mRNA_2871 0.25 -2.2
411,531 + 11239 mRNA_2871 0.28 -0.5
411,660 - 11239 mRNA_2871 0.44 -0.2
411,687 + 11239 mRNA_2871 0.47 0.2
411,692 - 11239 mRNA_2871 0.48 -1.7
411,692 - 11239 mRNA_2871 0.48 -0.1
411,695 + 11239 mRNA_2871 0.48 -0.4
411,841 - 11239 mRNA_2871 0.66 1.4
411,938 - 11239 mRNA_2871 0.79 1.3
411,944 - 11239 mRNA_2871 0.79 -2.8
412,077 + -0.4
412,102 - 0.3
412,123 + -0.1
412,239 - 0.3
412,278 - 1.5
412,281 + -0.1
412,285 + -0.8
412,287 - -0.6
412,288 - -0.8
412,288 - 1.0
412,293 + -1.3
412,294 + -1.6
412,301 - -0.2
412,303 - -0.1
412,309 + -1.1
412,317 - -0.4
412,318 - 0.3
412,368 - -1.0
412,615 + 0.3
412,769 - 11240 mRNA_2872 0.18 -0.4
412,914 - 11240 mRNA_2872 0.28 -0.4
413,045 + 11240 mRNA_2872 0.36 -1.7
413,090 + 11240 mRNA_2872 0.39 0.9