Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2819

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2818: 11186 - K02178 BUB1 checkpoint serine/threonine-protein kinase, at 292080 to 296876 11186 mRNA_2819: 11187 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 297100 to 297771 11187 mRNA_2820: 11188 - HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777, at 297960 to 299453 11188

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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296,160 - 11186 mRNA_2818 0.85 -1.5
296,871 + 0.1
296,989 - -0.7
297,018 + 0.6
297,018 - -2.0
297,436 - 11187 mRNA_2819 0.50 -0.3
297,439 - 11187 mRNA_2819 0.50 -1.2
297,456 + 11187 mRNA_2819 0.53 0.9
297,479 + 11187 mRNA_2819 0.56 0.3
297,862 + -0.7
297,966 + 0.1
298,039 + 1.7
298,068 + -1.8
298,144 - 11188 mRNA_2820 0.12 0.2