Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2453

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165209 to 166286 10820 mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166755 to 168701 10821 mRNA_2454: 10822 - K12823 DDX5, DBP2 ATP-dependent RNA helicase DDX5/DBP2, at 169687 to 172594 10822

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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165,847 - 10820 mRNA_2452 0.59 1.5
165,917 - 10820 mRNA_2452 0.66 0.2
166,296 - -3.3
166,605 - -3.1
167,048 + 10821 mRNA_2453 0.15 0.3
167,311 - 10821 mRNA_2453 0.29 -0.6
167,484 + 10821 mRNA_2453 0.37 -0.2
167,635 + 10821 mRNA_2453 0.45 -0.9
167,744 + 10821 mRNA_2453 0.51 0.5
167,785 + 10821 mRNA_2453 0.53 -0.8
167,899 - 10821 mRNA_2453 0.59 0.4
168,065 - 10821 mRNA_2453 0.67 -0.3
168,367 - 10821 mRNA_2453 0.83 0.1
168,389 + 10821 mRNA_2453 0.84 -1.1
168,524 + -0.1
168,613 - -1.9
168,634 - 0.2
168,649 - 0.3
168,659 - -2.6
168,737 + -1.7
168,756 - 1.6
168,778 - -1.3
168,790 + -2.3
168,792 + 0.1
168,794 + 1.0
168,797 + -1.9
168,797 + -0.8
168,802 - -0.9
168,804 + -0.7
168,808 - -0.5
168,818 + -1.8
168,819 - 1.1
168,821 - 1.0
168,822 + 2.0
168,824 + 0.0
168,824 + 0.0
168,840 + 0.3
168,846 + -0.4
168,861 - 0.4
168,883 - -0.7
168,912 - -2.5
168,921 + -0.9
168,925 - 0.5
168,944 + -0.2
168,949 + -1.4
168,953 + -0.2
168,953 - -1.0
168,965 - -0.9
168,965 + 0.9
168,967 + -1.1
168,973 - -1.7
169,002 - -0.2
169,006 - 1.9
169,009 - 0.2
169,010 - 0.8
169,012 + -0.4
169,013 - -0.4
169,019 + -1.8
169,023 - -1.8
169,025 - 0.8
169,025 - -0.1
169,026 + -0.1
169,027 - -2.6
169,034 + -2.3
169,036 - 0.8
169,041 - -0.1
169,041 - -3.7
169,046 + -1.9
169,048 - -0.3
169,048 - -0.6
169,050 - 0.3
169,053 + -0.3
169,053 + -0.4
169,057 - -1.2
169,059 + 1.1
169,089 - -2.7
169,090 - -2.3
169,097 - -1.2
169,101 + -1.0
169,101 + 1.8
169,102 + -0.2
169,103 + 0.0
169,105 + -0.6
169,106 + -0.2
169,107 + 1.0
169,107 - -0.6
169,108 + -1.0
169,110 - 0.4
169,119 - 0.6
169,124 + -0.9
169,138 + -0.1
169,155 - -0.7
169,172 - -0.4
169,178 + -1.0
169,179 - -1.9
169,184 - -1.9
169,185 + -2.1
169,198 + -0.9
169,211 - 0.2
169,291 - -0.6
169,300 + -1.2
169,450 + -1.5
169,683 + -3.1