Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2016

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2014: 10382 - K20697 GNBP1 gram-negative bacteria-binding protein 1, at 745416 to 747550 10382 mRNA_2015: 10383 - Hypothetical Protein, at 747541 to 748131 10383 mRNA_2016: 10384 - HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448, at 748205 to 751738 10384 mRNA_2017: 10385 - K12600 SKI3, TTC37 superkiller protein 3, at 752495 to 757859 10385

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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747,213 + 10382 mRNA_2014 0.84 -1.6
747,479 - -1.0
747,490 + 0.1
747,494 - -1.3
747,496 - -0.1
747,500 + -0.9
747,501 + -1.5
747,505 + -0.6
747,628 + 10383 mRNA_2015 0.15 0.3
747,639 - 10383 mRNA_2015 0.17 0.0
747,641 + 10383 mRNA_2015 0.17 -0.7
747,643 + 10383 mRNA_2015 0.17 -0.9
747,651 - 10383 mRNA_2015 0.19 -1.5
747,653 + 10383 mRNA_2015 0.19 0.3
747,655 - 10383 mRNA_2015 0.19 -0.9
747,667 - 10383 mRNA_2015 0.21 -1.0
747,673 + 10383 mRNA_2015 0.22 -1.3
747,673 + 10383 mRNA_2015 0.22 0.4
747,674 - 10383 mRNA_2015 0.23 0.1
747,679 - 10383 mRNA_2015 0.23 -1.3
747,684 + 10383 mRNA_2015 0.24 -1.2
747,689 + 10383 mRNA_2015 0.25 0.2
747,704 - 10383 mRNA_2015 0.28 -0.4
747,717 + 10383 mRNA_2015 0.30 0.4
747,738 + 10383 mRNA_2015 0.33 -0.1
747,741 + 10383 mRNA_2015 0.34 -0.7
747,743 + 10383 mRNA_2015 0.34 0.3
747,748 - 10383 mRNA_2015 0.35 -0.5
747,751 + 10383 mRNA_2015 0.36 -0.6
747,754 - 10383 mRNA_2015 0.36 1.2
747,756 - 10383 mRNA_2015 0.36 0.5
747,759 - 10383 mRNA_2015 0.37 0.5
747,760 - 10383 mRNA_2015 0.37 -0.6
747,774 - 10383 mRNA_2015 0.39 -3.9
747,786 - 10383 mRNA_2015 0.41 0.1
747,786 - 10383 mRNA_2015 0.41 0.0
747,796 - 10383 mRNA_2015 0.43 0.1
747,803 - 10383 mRNA_2015 0.44 -0.2
747,807 + 10383 mRNA_2015 0.45 -3.6
747,809 - 10383 mRNA_2015 0.45 -0.6
747,813 + 10383 mRNA_2015 0.46 -1.9
747,821 + 10383 mRNA_2015 0.47 -2.3
747,828 - 10383 mRNA_2015 0.49 0.1
747,831 + 10383 mRNA_2015 0.49 -1.0
747,840 + 10383 mRNA_2015 0.51 0.6
747,848 - 10383 mRNA_2015 0.52 0.0
747,855 - 10383 mRNA_2015 0.53 -0.5
747,857 + 10383 mRNA_2015 0.53 -0.8
747,859 + 10383 mRNA_2015 0.54 -1.6
747,895 - 10383 mRNA_2015 0.60 -1.5
747,927 - 10383 mRNA_2015 0.65 1.2
747,960 - 10383 mRNA_2015 0.71 0.1
747,985 - 10383 mRNA_2015 0.75 -0.6
748,012 + 10383 mRNA_2015 0.80 -1.7
748,034 + 10383 mRNA_2015 0.83 0.3
748,283 - 2.9
748,307 + 0.8
748,861 + 10384 mRNA_2016 0.19 0.7
748,994 - 10384 mRNA_2016 0.22 1.7
749,012 + 10384 mRNA_2016 0.23 -0.7
749,119 - 10384 mRNA_2016 0.26 -1.0
749,145 + 10384 mRNA_2016 0.27 0.0
749,185 - 10384 mRNA_2016 0.28 -2.2
749,591 + 10384 mRNA_2016 0.39 -0.9
749,602 - 10384 mRNA_2016 0.40 -0.9
749,730 + 10384 mRNA_2016 0.43 1.6
749,856 - 10384 mRNA_2016 0.47 -0.6
749,893 + 10384 mRNA_2016 0.48 -0.7
750,093 + 10384 mRNA_2016 0.53 0.5
750,139 + 10384 mRNA_2016 0.55 -1.4
750,180 + 10384 mRNA_2016 0.56 -2.3
750,198 + 10384 mRNA_2016 0.56 -0.8
750,324 + 10384 mRNA_2016 0.60 -1.8
750,361 + 10384 mRNA_2016 0.61 -0.8
750,449 + 10384 mRNA_2016 0.63 -0.2
750,671 - 10384 mRNA_2016 0.70 0.4
750,759 - 10384 mRNA_2016 0.72 1.1
750,796 + 10384 mRNA_2016 0.73 -0.9
751,486 - -1.8
751,596 + -0.0
751,605 + 0.7
751,657 - 0.3
751,683 - 0.1
751,785 + -1.3
751,962 - -0.3
752,039 - -0.4
752,134 + -0.4
752,208 - -0.2
752,333 + 0.4
752,351 - 0.5
752,371 - -0.6
752,533 + -3.3
752,558 - -0.9
752,621 - -3.2
752,704 + -3.2
752,729 + -1.1