Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8063

Experiments: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8062: 16430 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 329647 to 331079 16430 mRNA_8063: 16431 - HMMPfam-Protein of unknown function (DUF3500)-PF12006, at 331587 to 333110 16431 mRNA_8064: 16432 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 333407 to 335918 16432

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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330,607 - 16430 mRNA_8062 0.67 -0.1
330,723 - 16430 mRNA_8062 0.75 0.8
330,750 - 16430 mRNA_8062 0.77 -1.7
330,976 - 0.3
331,009 + -0.6
331,121 - 1.7
331,136 - 0.1
331,146 - -0.3
331,203 + -0.9
331,272 + 0.7
331,281 + 0.8
331,288 - 0.3
331,305 + 0.8
331,315 + -0.4
331,325 - 0.8
331,330 + -0.5
331,343 - 0.2
331,351 - -1.0
331,351 - 1.3
331,352 - 0.7
331,359 + 0.1
331,359 - 0.8
331,360 + 0.6
331,364 - 0.1
331,365 - 0.3
331,373 - 0.7
331,379 + -0.4
331,384 + -0.1
331,394 + -0.9
331,496 + -0.2
331,506 - -0.2
331,522 - -0.5
331,535 + -0.3
331,636 - -3.4
331,667 + 0.5
331,767 + 16431 mRNA_8063 0.12 0.6
331,780 - 16431 mRNA_8063 0.13 1.4
332,644 - 16431 mRNA_8063 0.69 -1.5
332,655 + 16431 mRNA_8063 0.70 1.6
332,667 + 16431 mRNA_8063 0.71 -1.6
332,796 - 16431 mRNA_8063 0.79 0.2
332,801 - 16431 mRNA_8063 0.80 -1.1
332,930 - 16431 mRNA_8063 0.88 1.1
332,950 + 16431 mRNA_8063 0.89 -1.4
333,080 - 0.8
333,111 + 0.9
333,126 - -0.2
333,210 - 0.7
333,229 + 2.4
333,231 + -0.3
333,254 + -2.6
333,262 - 0.5
333,264 + 0.2
333,269 - 1.6
333,273 + -0.7
333,278 - -0.1
333,279 + 0.6
333,374 - 0.1
333,398 + 0.1
333,412 - 0.1
333,427 + -0.0
333,522 - -0.8
333,543 - 1.3
333,548 + 0.4
333,548 + 0.7
333,579 - 1.1
333,599 - 0.2
333,721 + 16432 mRNA_8064 0.12 0.3
333,835 - 16432 mRNA_8064 0.17 0.6
333,850 - 16432 mRNA_8064 0.18 -0.3
333,860 + 16432 mRNA_8064 0.18 -0.4
333,989 + 16432 mRNA_8064 0.23 -0.7
334,054 + 16432 mRNA_8064 0.26 -1.5