Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3079

Experiments: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265905 to 270528 11446 mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270913 to 272289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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269,922 - 11446 mRNA_3078 0.87 0.2
269,924 - 11446 mRNA_3078 0.87 0.7
269,982 + 11446 mRNA_3078 0.88 0.2
270,119 + 1.3
270,132 - 0.4
270,172 - -0.2
270,278 + -1.4
270,280 + -1.2
270,282 - -1.9
270,407 - -1.7
270,407 - 1.9
270,407 - -1.0
270,415 - 0.4
270,538 + -0.4
270,558 + -2.2
270,569 - 2.1
270,578 + 0.9
270,579 + -0.2
270,700 - 0.1
270,701 - 0.6
270,701 - 0.1
270,711 + -0.3
270,717 + 1.3
270,721 - -1.2
270,728 - 0.3
270,732 + -0.7
270,857 - -0.8
270,859 - -2.8
270,890 + 1.1
271,039 - -2.0
271,163 - 11447 mRNA_3079 0.18 0.2
271,182 - 11447 mRNA_3079 0.20 -0.2
271,327 + 11447 mRNA_3079 0.30 -0.4
271,423 - 11447 mRNA_3079 0.37 -1.7
271,488 + 11447 mRNA_3079 0.42 -0.0
271,602 - 11447 mRNA_3079 0.50 -0.7
271,625 + 11447 mRNA_3079 0.52 0.3
271,650 - 11447 mRNA_3079 0.54 1.1
271,669 - 11447 mRNA_3079 0.55 -1.1
271,710 - 11447 mRNA_3079 0.58 -1.8
271,710 - 11447 mRNA_3079 0.58 1.6
271,757 - 11447 mRNA_3079 0.61 0.3
271,906 + 11447 mRNA_3079 0.72 -2.4
271,953 + 11447 mRNA_3079 0.76 -0.2
272,120 - 11447 mRNA_3079 0.88 -0.7
272,174 + 0.7
272,189 + 1.4
272,331 + -0.3
272,339 + 0.4
272,466 - 2.7
272,493 - -0.8
272,581 + 1.1
272,620 - 0.3
272,903 - 11448 mRNA_3080 0.22 -0.2
273,232 - 11448 mRNA_3080 0.44 1.0