Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1904

Experiments: Sorted No BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1903: 10271 - HMMPfam-Sfi1 spindle body protein-PF08457, at 474303 to 478311 10271 mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479057 to 480594 10272 mRNA_1905: 10273 - Hypothetical Protein, at 480800 to 481665 10273

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
remove
478,198 - 0.3
478,730 - 1.8
479,113 + 0.3
479,278 + 10272 mRNA_1904 0.14 0.3
479,284 - 10272 mRNA_1904 0.15 0.5
479,547 + 10272 mRNA_1904 0.32 -2.2
479,689 + 10272 mRNA_1904 0.41 -0.3
479,861 + 10272 mRNA_1904 0.52 0.4
480,169 + 10272 mRNA_1904 0.72 -1.4
480,416 + 10272 mRNA_1904 0.88 0.2
480,691 - 0.5
480,696 + -0.8
480,706 + -0.1
480,715 + 0.7
480,723 + -0.7
480,820 + 1.2
480,831 - -0.1
480,841 + -0.7
480,841 + -0.2
480,857 + 0.3
480,905 + 10273 mRNA_1905 0.12 -0.9
480,930 - 10273 mRNA_1905 0.15 0.4
480,938 + 10273 mRNA_1905 0.16 -0.3
480,976 + 10273 mRNA_1905 0.20 -1.0
480,982 - 10273 mRNA_1905 0.21 0.8
480,997 + 10273 mRNA_1905 0.23 0.6
481,054 + 10273 mRNA_1905 0.29 0.0
481,093 + 10273 mRNA_1905 0.34 0.1
481,106 + 10273 mRNA_1905 0.35 0.0
481,107 - 10273 mRNA_1905 0.35 0.7
481,113 + 10273 mRNA_1905 0.36 -0.6
481,114 + 10273 mRNA_1905 0.36 0.3
481,129 - 10273 mRNA_1905 0.38 -0.2
481,132 + 10273 mRNA_1905 0.38 0.1
481,135 + 10273 mRNA_1905 0.39 0.9
481,135 + 10273 mRNA_1905 0.39 0.7
481,158 + 10273 mRNA_1905 0.41 1.3
481,170 - 10273 mRNA_1905 0.43 0.8
481,190 + 10273 mRNA_1905 0.45 1.8
481,202 + 10273 mRNA_1905 0.46 0.6
481,213 + 10273 mRNA_1905 0.48 0.7
481,220 + 10273 mRNA_1905 0.48 1.0
481,235 - 10273 mRNA_1905 0.50 0.1
481,236 + 10273 mRNA_1905 0.50 -0.3
481,244 + 10273 mRNA_1905 0.51 0.5
481,314 - 10273 mRNA_1905 0.59 1.6
481,315 + 10273 mRNA_1905 0.59 -2.6
481,334 + 10273 mRNA_1905 0.62 0.6
481,378 - 10273 mRNA_1905 0.67 0.5
481,384 + 10273 mRNA_1905 0.67 0.3
481,399 - 10273 mRNA_1905 0.69 -2.2
481,403 - 10273 mRNA_1905 0.70 1.2
481,425 - 10273 mRNA_1905 0.72 -1.5
481,432 + 10273 mRNA_1905 0.73 1.4
481,439 + 10273 mRNA_1905 0.74 -0.1
481,453 - 10273 mRNA_1905 0.75 0.9
481,454 + 10273 mRNA_1905 0.76 0.1
481,455 - 10273 mRNA_1905 0.76 -0.9
481,458 + 10273 mRNA_1905 0.76 -0.5
481,465 - 10273 mRNA_1905 0.77 -1.2
481,468 + 10273 mRNA_1905 0.77 -0.2
481,469 + 10273 mRNA_1905 0.77 0.0
481,485 + 10273 mRNA_1905 0.79 0.3
481,489 - 10273 mRNA_1905 0.80 -1.7
481,501 - 10273 mRNA_1905 0.81 -0.5
481,536 + 10273 mRNA_1905 0.85 -0.3
481,549 - 10273 mRNA_1905 0.86 1.4