Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1818

Experiments: Sorted No BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285247 to 286558 10185 mRNA_1818: 10186 - Hypothetical Protein, at 286917 to 287591 10186 mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287876 to 290451 10187

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted No BODIPY Gate
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286,669 - -1.7
286,677 + 0.6
286,696 + -0.6
286,697 + -0.2
286,701 + -1.0
286,728 + 0.5
286,807 - -0.1
286,825 - 0.5
286,825 - 1.4
286,839 - -0.4
286,841 - -0.2
286,841 - 0.3
286,849 - 0.9
286,849 - -0.0
286,852 - 0.8
286,855 - 1.2
286,862 - 0.1
286,871 + 1.0
286,887 + 0.6
287,167 + 10186 mRNA_1818 0.37 -2.0
287,172 - 10186 mRNA_1818 0.38 0.7
287,175 + 10186 mRNA_1818 0.38 -0.1
287,196 - 10186 mRNA_1818 0.41 -2.2
287,199 + 10186 mRNA_1818 0.42 -1.0
287,311 - 10186 mRNA_1818 0.58 -0.5
287,331 - 10186 mRNA_1818 0.61 -0.3
287,335 - 10186 mRNA_1818 0.62 -1.3
287,359 - 10186 mRNA_1818 0.65 0.6
287,382 + 10186 mRNA_1818 0.69 -1.4
287,395 + 10186 mRNA_1818 0.71 -0.5
287,400 - 10186 mRNA_1818 0.72 0.3
287,403 + 10186 mRNA_1818 0.72 0.2
287,406 + 10186 mRNA_1818 0.72 0.8
287,489 + 10186 mRNA_1818 0.85 0.6
287,533 + 0.4
287,645 + -0.7
287,654 - 0.6
287,656 + 2.0
287,660 - -1.9
287,712 - -1.8
287,721 + 1.1
287,778 - 0.7
287,778 + 0.0
287,778 + -1.2
287,795 + 1.4
287,803 + 0.8
287,853 - 2.1
287,967 + -0.2
287,995 - 0.3
288,007 - -0.8
288,010 + 0.7
288,014 + -0.7
288,017 - 0.4
288,018 + 2.1
288,019 + 1.0
288,037 + -0.0
288,151 + 10187 mRNA_1819 0.11 -1.7
288,164 + 10187 mRNA_1819 0.11 0.1
288,171 + 10187 mRNA_1819 0.11 0.2
288,472 + 10187 mRNA_1819 0.23 -2.0
288,479 + 10187 mRNA_1819 0.23 -0.8
288,497 + 10187 mRNA_1819 0.24 -0.0