Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1569

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1568: 9936 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 615434 to 616155 9936 mRNA_1569: 9937 - KOG3114 Uncharacterized conserved protein, at 616331 to 617555 9937 mRNA_1570: 9938 - KOG2533 Permease of the major facilitator superfamily, at 617747 to 619889 9938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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615,355 - 1.3
615,387 - -0.6
615,390 + 0.3
615,932 - 9936 mRNA_1568 0.69 0.2
616,100 + -1.0
616,231 + -0.8
616,244 + -0.8
616,249 + -0.3
616,251 + -0.0
616,950 - 9937 mRNA_1569 0.51 -1.0
618,088 + 9938 mRNA_1570 0.16 1.1
618,105 + 9938 mRNA_1570 0.17 -1.3
618,195 + 9938 mRNA_1570 0.21 -0.3
618,232 - 9938 mRNA_1570 0.23 -0.5
618,238 + 9938 mRNA_1570 0.23 -0.1
618,516 + 9938 mRNA_1570 0.36 0.0
618,523 + 9938 mRNA_1570 0.36 -0.4