Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1546

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1545: 9913 - Hypothetical Protein, at 558416 to 558832 9913 mRNA_1546: 9914 - K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23, at 559318 to 562481 9914 mRNA_1547: 9915 - K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2, at 562585 to 566021 9915

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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558,332 - -0.9
558,349 + -0.7
558,350 - 0.6
558,483 + 9913 mRNA_1545 0.16 -0.5
558,509 - 9913 mRNA_1545 0.22 0.1
558,648 + 9913 mRNA_1545 0.56 0.1
558,781 + 9913 mRNA_1545 0.88 -0.5
558,928 + -1.0
559,080 + 1.3
559,088 + -0.2
559,144 - 0.3
559,216 + 2.0
559,242 - 0.6
559,347 - -1.5
559,365 - 1.2
559,391 - -0.4
559,674 + 9914 mRNA_1546 0.11 0.7
561,259 - 9914 mRNA_1546 0.61 -0.0
562,082 - 9914 mRNA_1546 0.87 1.6
562,104 - 9914 mRNA_1546 0.88 0.8
562,407 - -0.2
562,518 + -0.2