Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1473

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383411 to 384622 9840 mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385086 to 387836 9841 mRNA_1474: 9842 - Hypothetical Protein, at 388451 to 391356 9842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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384,529 + -0.2
384,548 + -1.6
384,653 + -1.4
384,694 + -0.5
384,713 + 0.3
384,724 + 0.6
384,777 + -1.5
384,792 - 0.3
384,814 + 0.3
384,914 + -1.5
384,930 + 0.1
384,931 + -0.3
384,938 + -0.5
384,938 + 0.4
384,968 + 0.2
384,974 - -0.1
384,985 + -0.4
384,988 - 0.4
384,991 - -0.3
384,992 + -1.0
384,996 - 2.4
385,005 - -0.0
385,062 + 0.7
385,063 - 0.4
385,070 - 0.4
385,096 - -0.4
385,098 - -0.1
385,099 + -0.9
385,119 - -0.0
385,119 - 0.1
385,119 + 1.0
385,122 + -0.6
385,131 - -0.2
385,133 + -0.6
385,134 - -0.9
385,153 + -0.6
385,219 - -2.0
385,220 - -0.1
385,261 - -0.7
385,268 + -0.0
385,271 - 1.2
385,304 + -1.2
385,398 - 9841 mRNA_1473 0.11 -0.5
385,406 - 9841 mRNA_1473 0.12 -1.5
385,423 - 9841 mRNA_1473 0.12 -0.5
385,916 - 9841 mRNA_1473 0.30 0.0
385,990 + 9841 mRNA_1473 0.33 -0.1
386,043 + 9841 mRNA_1473 0.35 0.1
386,162 + 9841 mRNA_1473 0.39 -0.0
386,318 - 9841 mRNA_1473 0.45 -0.1
387,160 - 9841 mRNA_1473 0.75 1.4
387,475 + 9841 mRNA_1473 0.87 -0.6
387,634 + -0.7
387,636 + 0.1
387,740 + 0.6
387,910 + 0.4
387,940 + -0.2
388,059 - 0.2
388,062 + -1.0
388,064 - -0.0
388,199 - -0.4
388,205 - 0.1
388,219 - -0.2
388,223 - 0.2
388,229 - -0.4
388,229 + -0.7
388,230 + -0.3
388,235 - -0.2
388,235 + -0.4
388,235 + 2.2
388,238 + -2.2
388,240 + -0.2
388,246 + 1.6
388,251 + -0.7
388,255 - 0.1
388,345 + 0.1
388,365 - -0.1
388,388 + -0.5
388,396 + -0.1
388,502 - -0.6
388,670 - 0.4
388,734 - -0.9
388,795 + 9842 mRNA_1474 0.12 0.3