Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1450

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1449: 9817 - K03325 TC.ACR3 arsenite transporter, ACR3 family, at 315530 to 317378 9817 mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317721 to 321691 9818 mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321832 to 325764 9819

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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316,827 + 9817 mRNA_1449 0.70 -0.5
316,952 - 9817 mRNA_1449 0.77 -0.3
316,957 + 9817 mRNA_1449 0.77 -0.3
316,977 + 9817 mRNA_1449 0.78 -0.6
316,980 + 9817 mRNA_1449 0.78 0.5
316,980 + 9817 mRNA_1449 0.78 -0.1
317,144 + 9817 mRNA_1449 0.87 -1.5
317,264 - 0.2
317,266 + -2.0
317,284 + 0.1
317,305 - -0.4
317,403 - 0.0
317,414 + 0.5
317,421 + 0.0
317,423 - -1.6
317,432 + -0.5
317,432 + 1.1
317,434 + 0.8
317,449 + 1.4
317,451 - -0.4
317,452 + 1.0
317,488 - -1.8
317,502 - 1.2
317,534 + 0.3
317,553 + -0.0
317,555 + 0.3
317,557 - 0.4
317,561 + 0.3
317,563 + -0.3
317,683 - 0.8
321,083 - 9818 mRNA_1450 0.85 -1.0
321,146 - 9818 mRNA_1450 0.86 0.4
321,152 - 9818 mRNA_1450 0.86 1.2
321,153 + 9818 mRNA_1450 0.86 -1.4
321,644 - 0.3
321,860 + -0.2
321,903 - 1.9
322,279 - 9819 mRNA_1451 0.11 0.3