Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1377

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1376: 9744 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SUPERFAMILY--SSF47459, at 127099 to 128886 9744 mRNA_1377: 9745 - Hypothetical Protein, at 129264 to 129958 9745 mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130369 to 133964 9746

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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128,354 + 9744 mRNA_1376 0.70 0.5
128,510 - 9744 mRNA_1376 0.79 -0.1
128,804 - 0.7
128,965 + -0.3
129,101 + 0.1
129,109 - -0.5
129,110 + 0.3
129,118 + -0.6
129,119 - 1.1
129,127 + -0.7
129,135 + -0.3
129,160 + -0.3
129,394 + 9745 mRNA_1377 0.19 -0.8
129,578 + 9745 mRNA_1377 0.45 -1.2
129,667 - 9745 mRNA_1377 0.58 -2.1
129,680 + 9745 mRNA_1377 0.60 0.1
129,690 + 9745 mRNA_1377 0.61 -0.6
129,841 - 9745 mRNA_1377 0.83 0.6
129,858 - 9745 mRNA_1377 0.85 1.3
129,965 - 0.3
129,981 - -0.9
129,996 + -0.5
129,996 - 0.0
130,156 - 1.7
130,289 - -0.2
130,290 - 0.3
130,296 + -1.0
130,311 - 1.0
130,405 - 1.1
130,412 + 0.6
130,419 - 0.6
130,421 + 0.3
130,424 - -0.2
130,694 - -1.2
130,715 - -0.5
130,733 + 9746 mRNA_1378 0.10 0.6