Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1299

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1298: 9666 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF13881,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SUPERFAMILY--SSF54236, at 859180 to 859998 9666 mRNA_1299: 9667 - K00600 glyA, SHMT glycine hydroxymethyltransferase, at 860509 to 862713 9667 mRNA_1300: 9668 - BLAST polynucleotide 5-hydroxyl-kinase grc3 [Xanthophyllomy..., at 862697 to 864122 9668

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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859,568 - 9666 mRNA_1298 0.47 0.1
859,600 - 9666 mRNA_1298 0.51 -0.8
859,615 + 9666 mRNA_1298 0.53 -1.7
859,761 - 9666 mRNA_1298 0.71 0.6
859,763 + 9666 mRNA_1298 0.71 0.8
859,764 - 9666 mRNA_1298 0.71 -1.2
859,769 + 9666 mRNA_1298 0.72 -0.7
859,769 - 9666 mRNA_1298 0.72 -0.1
859,779 + 9666 mRNA_1298 0.73 -0.7
859,784 - 9666 mRNA_1298 0.74 -0.3
859,794 + 9666 mRNA_1298 0.75 -2.3
859,804 + 9666 mRNA_1298 0.76 -0.2
859,821 + 9666 mRNA_1298 0.78 0.3
859,845 + 9666 mRNA_1298 0.81 0.8
859,846 - 9666 mRNA_1298 0.81 -0.9
859,851 - 9666 mRNA_1298 0.82 0.5
859,854 - 9666 mRNA_1298 0.82 -0.2
859,856 + 9666 mRNA_1298 0.83 -0.9
859,857 - 9666 mRNA_1298 0.83 -0.1
859,860 + 9666 mRNA_1298 0.83 -0.3
859,862 + 9666 mRNA_1298 0.83 -0.5
859,865 - 9666 mRNA_1298 0.84 0.6
859,867 + 9666 mRNA_1298 0.84 1.0
859,870 - 9666 mRNA_1298 0.84 -0.4
859,872 + 9666 mRNA_1298 0.84 -1.0
859,872 + 9666 mRNA_1298 0.84 -1.5
859,882 + 9666 mRNA_1298 0.86 0.3
859,892 - 9666 mRNA_1298 0.87 1.1
859,912 + 9666 mRNA_1298 0.89 -1.1
859,916 + 9666 mRNA_1298 0.90 -1.5
859,925 - -0.3
859,974 + -1.3
859,994 - -2.7
860,062 - 1.0
860,074 + 0.1
860,097 - -0.1
860,136 + -1.8
860,145 - 0.4
860,204 - -0.2
860,228 - 0.3
860,237 - 1.7
860,264 - -0.8
860,270 + -0.3
860,279 - 0.1
860,279 + -1.8
860,290 + -0.2
860,300 - -0.9
860,395 + -0.6
860,407 + 0.1
860,415 - 0.1
862,352 + 9667 mRNA_1299 0.84 0.8
862,677 - 1.2
862,783 - 0.8
862,789 - -0.5
862,790 + -0.9
862,792 + -0.9
862,792 - 0.6
862,794 - -2.0
862,805 + -0.9
862,807 + -1.2
862,811 + 0.4
862,811 + -0.3
862,813 - -2.0
862,814 - -1.2
862,814 - 1.4
862,816 + -1.2
862,820 - -2.2
862,821 + 0.0
862,823 + -0.2
862,827 - 0.8
862,830 + -0.4
862,840 - 9668 mRNA_1300 0.10 -0.5
862,848 - 9668 mRNA_1300 0.11 -0.5
862,851 - 9668 mRNA_1300 0.11 -0.8
863,321 + 9668 mRNA_1300 0.44 0.0