Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1293

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846383 to 850419 9660 mRNA_1293: 9661 - Hypothetical Protein, at 850858 to 851999 9661 mRNA_1294: 9662 - K20369 ERV29, SURF4 ER-derived vesicles protein, at 852831 to 853984 9662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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849,896 - 9660 mRNA_1292 0.87 -0.7
850,122 - 0.1
850,141 - -0.3
850,148 + -0.3
850,290 - -0.7
850,299 + -0.7
850,307 + -0.1
850,325 - -1.0
850,344 + 0.8
850,420 + -0.2
850,487 + -1.0
850,546 - -0.5
850,602 - -0.6
850,740 - 0.2
850,743 - -2.6
850,744 - -1.5
850,884 + 0.3
850,936 + -0.5
851,035 + 9661 mRNA_1293 0.15 0.2
851,206 - 9661 mRNA_1293 0.30 0.9
851,531 + 9661 mRNA_1293 0.59 -0.1
851,656 + 9661 mRNA_1293 0.70 -0.1
851,730 + 9661 mRNA_1293 0.76 -0.7
851,768 - 9661 mRNA_1293 0.80 -0.5
851,859 - 9661 mRNA_1293 0.88 0.6
851,863 - 9661 mRNA_1293 0.88 0.2
851,882 - 9661 mRNA_1293 0.90 0.0
851,891 - 0.3
851,897 + 0.7
851,900 + 0.1
851,906 - -0.3
851,914 - -0.6
851,917 + -1.1
852,137 - -0.2
852,277 - 0.7
852,338 - 0.7
852,343 + -0.1
852,353 + 2.1
852,356 + -1.4
852,359 + -1.3
852,362 + 0.6
852,372 + 0.3
852,490 - 0.1
852,492 + 1.1
852,501 - -1.8
852,510 - 0.6
852,637 - -0.4
852,925 - -0.9