Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1168

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1167: 9535 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 557587 to 560660 9535 mRNA_1168: 9536 - K01474 hyuB N-methylhydantoinase B, at 560884 to 563023 9536 mRNA_1169: 9537 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 563547 to 566148 9537

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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560,200 - 9535 mRNA_1167 0.85 -0.3
560,288 - 9535 mRNA_1167 0.88 0.6
560,749 + -1.8
560,755 - 0.9
560,765 + -0.6
560,765 + 1.2
560,908 + -0.4
560,978 - -0.6
561,268 + 9536 mRNA_1168 0.18 -0.5
561,406 - 9536 mRNA_1168 0.24 0.3
561,422 + 9536 mRNA_1168 0.25 0.2
561,437 - 9536 mRNA_1168 0.26 -0.0
561,464 - 9536 mRNA_1168 0.27 0.4
561,482 - 9536 mRNA_1168 0.28 -0.0
561,697 - 9536 mRNA_1168 0.38 -0.1
561,903 + 9536 mRNA_1168 0.48 -2.5
562,866 + 0.4
563,010 - -0.3
563,014 - -0.8
563,096 - -0.8
563,177 - -0.7
563,177 + 1.0
563,177 + 0.1
563,218 + 0.3
563,341 - -0.2
563,351 + -0.0
563,352 + 0.1
563,401 - 0.9
563,404 - -1.0
563,429 - 0.4
563,456 - -0.6
563,678 - -0.9
563,683 + -0.5
563,829 + 9537 mRNA_1169 0.11 -0.2