Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1084

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1084: 9452 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 371981 to 373255 9452 mRNA_1085: 9453 - Hypothetical Protein, at 373772 to 374332 9453

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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371,219 - 1.0
371,228 + -0.2
371,244 + 1.5
371,354 + -0.2
371,459 - -0.4
371,460 + -1.5
371,462 - -0.1
371,466 - -1.3
371,468 + 0.5
372,109 - 9452 mRNA_1084 0.10 -0.0
372,136 - 9452 mRNA_1084 0.12 -0.5
372,217 - 9452 mRNA_1084 0.19 0.1
372,643 - 9452 mRNA_1084 0.52 1.2
372,668 + 9452 mRNA_1084 0.54 1.4
372,674 - 9452 mRNA_1084 0.54 -1.1
372,675 + 9452 mRNA_1084 0.54 1.7
372,792 + 9452 mRNA_1084 0.64 -0.1
372,811 + 9452 mRNA_1084 0.65 -0.2
372,812 - 9452 mRNA_1084 0.65 1.2
372,854 - 9452 mRNA_1084 0.68 -0.5
373,119 - 9452 mRNA_1084 0.89 -0.8
373,140 + 0.1
373,551 + 0.2
373,591 - 0.5
373,591 - 0.6
373,597 + -0.1
373,597 - -2.4
373,746 - 0.5
373,790 - 1.1
373,888 - 9453 mRNA_1085 0.21 -2.2
373,919 + 9453 mRNA_1085 0.26 0.1
373,937 - 9453 mRNA_1085 0.29 1.5