Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1042

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1041: 9409 - K08504 BET1 blocked early in transport 1, at 260898 to 261462 9409 mRNA_1042: 9410 - Hypothetical Protein, at 261583 to 262732 9410 mRNA_1043: 9411 - K16732 PRC1 protein regulator of cytokinesis 1, at 262893 to 265321 9411

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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260,615 + 1.5
260,624 - -0.8
260,635 + -1.3
260,643 + -0.7
260,746 - 0.9
260,901 + 1.1
260,932 + -0.1
261,064 - 9409 mRNA_1041 0.29 0.2
261,085 - 9409 mRNA_1041 0.33 -0.1
261,087 + 9409 mRNA_1041 0.33 -1.1
261,194 - 9409 mRNA_1041 0.52 1.8
261,210 - 9409 mRNA_1041 0.55 -1.8
261,349 - 9409 mRNA_1041 0.80 -0.2
261,350 + 9409 mRNA_1041 0.80 -0.4
261,355 + 9409 mRNA_1041 0.81 -0.1
261,373 + 9409 mRNA_1041 0.84 -0.3
261,506 - -0.3
261,554 - 0.6
261,655 + -0.3
261,820 - 9410 mRNA_1042 0.21 -0.8
261,888 + 9410 mRNA_1042 0.27 0.1
261,911 + 9410 mRNA_1042 0.29 -0.6
261,932 + 9410 mRNA_1042 0.30 1.2
261,932 - 9410 mRNA_1042 0.30 -0.9
262,106 - 9410 mRNA_1042 0.45 -0.2
262,110 + 9410 mRNA_1042 0.46 -0.4
262,255 - 9410 mRNA_1042 0.58 0.2
262,414 - 9410 mRNA_1042 0.72 0.0
262,419 - 9410 mRNA_1042 0.73 -0.2
262,421 + 9410 mRNA_1042 0.73 -0.4
262,427 - 9410 mRNA_1042 0.73 0.0
262,582 - 9410 mRNA_1042 0.87 0.1
262,588 + 9410 mRNA_1042 0.87 -0.3
262,624 - 0.2
262,720 + 0.0
262,733 + -0.5
262,851 + -0.0
262,854 - 1.5
263,005 - 1.5
263,027 + 0.0
263,273 - 9411 mRNA_1043 0.16 -1.4
263,411 - 9411 mRNA_1043 0.21 -0.5
263,579 - 9411 mRNA_1043 0.28 0.3