Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1012

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1011: 9379 - Hypothetical Protein, at 203072 to 203287 9379 mRNA_1012: 9380 - Hypothetical Protein, at 203775 to 207320 9380 mRNA_1013: 9381 - K11761 NPL6, RSC7 chromatin structure-remodeling complex protein RSC7, at 207547 to 209466 9381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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202,834 - 0.5
202,839 - 0.4
202,858 + 0.0
202,865 + -0.0
203,032 - 0.0
203,033 + -0.4
203,035 - 0.4
203,036 + -0.2
203,101 - 9379 mRNA_1011 0.13 -0.5
203,126 - 9379 mRNA_1011 0.25 0.4
203,131 - 9379 mRNA_1011 0.27 0.4
203,141 + 9379 mRNA_1011 0.32 0.2
203,152 + 9379 mRNA_1011 0.37 -1.2
203,154 - 9379 mRNA_1011 0.38 -0.1
203,229 - 9379 mRNA_1011 0.73 -1.3
203,285 + -0.9
203,299 + -0.5
203,306 + -0.2
203,310 + 1.5
203,312 - -2.5
203,314 - -1.0
203,315 + 0.8
203,370 - -1.2
203,415 + 0.0
203,421 + 0.9
203,702 - 0.2
203,837 + 0.3
203,890 - -1.1
204,297 - 9380 mRNA_1012 0.15 0.1
204,323 - 9380 mRNA_1012 0.15 0.0
204,582 - 9380 mRNA_1012 0.23 0.4
204,836 + 9380 mRNA_1012 0.30 -1.3
204,925 + 9380 mRNA_1012 0.32 0.0
204,955 - 9380 mRNA_1012 0.33 0.3
205,031 - 9380 mRNA_1012 0.35 -0.2
205,138 + 9380 mRNA_1012 0.38 -0.3
205,165 - 9380 mRNA_1012 0.39 -0.4
205,248 - 9380 mRNA_1012 0.42 -0.9
205,286 - 9380 mRNA_1012 0.43 -0.0
205,294 + 9380 mRNA_1012 0.43 -0.3
205,417 - 9380 mRNA_1012 0.46 -0.5
205,504 + 9380 mRNA_1012 0.49 -0.6
205,519 + 9380 mRNA_1012 0.49 2.3
205,678 + 9380 mRNA_1012 0.54 0.2
205,686 - 9380 mRNA_1012 0.54 0.7
205,940 - 9380 mRNA_1012 0.61 0.2
205,942 + 9380 mRNA_1012 0.61 -0.2
206,032 - 9380 mRNA_1012 0.64 -0.1
206,115 + 9380 mRNA_1012 0.66 -1.7
206,262 - 9380 mRNA_1012 0.70 -0.6
206,368 - 9380 mRNA_1012 0.73 -1.3
206,395 - 9380 mRNA_1012 0.74 -0.2
206,533 - 9380 mRNA_1012 0.78 -0.2
206,627 + 9380 mRNA_1012 0.80 1.5
206,695 - 9380 mRNA_1012 0.82 -1.0
206,710 + 9380 mRNA_1012 0.83 -0.0
206,997 + -0.8
207,043 - -1.0
207,134 + -0.1
207,144 - -0.9
207,179 - -0.6
207,238 + 0.7
207,244 - -1.0
207,410 - -0.4
207,457 + 1.0
208,076 - 9381 mRNA_1013 0.28 1.1
208,158 - 9381 mRNA_1013 0.32 0.9