Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1007

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1006: 9374 - KOG4569 Predicted lipase, at 188789 to 191273 9374 mRNA_1007: 9375 - HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537, at 191628 to 193033 9375 mRNA_1008: 9376 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 193375 to 193873 9376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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190,635 + 9374 mRNA_1006 0.74 0.3
190,782 + 9374 mRNA_1006 0.80 1.1
190,919 + 9374 mRNA_1006 0.86 -1.6
190,941 + 9374 mRNA_1006 0.87 -0.1
191,002 - 9374 mRNA_1006 0.89 -0.4
191,165 + 0.3
191,619 + 0.0
192,239 + 9375 mRNA_1007 0.43 -1.0
192,346 - 9375 mRNA_1007 0.51 0.2
192,491 - 9375 mRNA_1007 0.61 0.6
192,933 + -0.1
193,240 - -0.4
193,418 + -0.5
193,652 - 9376 mRNA_1008 0.56 2.2
193,652 - 9376 mRNA_1008 0.56 -0.0
193,668 - 9376 mRNA_1008 0.59 0.3
193,680 + 9376 mRNA_1008 0.61 -0.4
193,806 - 9376 mRNA_1008 0.86 0.4
193,830 - -1.6
193,832 + -0.9
193,950 - -0.0
193,953 - -0.2
193,963 - -0.8
193,965 - 0.2
193,971 + -0.4
193,971 - -0.7
193,974 - 1.0
193,974 - -2.5
193,975 + 0.1
193,978 - -0.0
193,988 - 0.0
193,990 + -0.1
194,000 + -0.5