Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_533

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_532: 8900 - K05355 hexPS, COQ1 hexaprenyl-diphosphate synthase, at 1266641 to 1268317 8900 mRNA_533: 8901 - K17759 AIBP, nnrE NAD(P)H-hydrate epimerase, at 1268591 to 1269786 8901 mRNA_534: 8902 - K08054 CANX calnexin, at 1270222 to 1272470 8902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,268,225 + 1.3
1,268,366 + -1.2
1,268,385 - -0.9
1,268,392 - -0.5
1,268,657 + -0.1
1,268,657 + -0.5
1,268,928 - 8901 mRNA_533 0.28 0.4
1,268,931 - 8901 mRNA_533 0.28 -1.5
1,269,074 - 8901 mRNA_533 0.40 -0.6
1,269,187 - 8901 mRNA_533 0.50 -0.6
1,269,205 + 8901 mRNA_533 0.51 -0.3
1,269,223 - 8901 mRNA_533 0.53 -0.8
1,269,245 - 8901 mRNA_533 0.55 -0.8
1,269,409 + 8901 mRNA_533 0.68 1.3
1,269,653 - 8901 mRNA_533 0.89 0.8
1,269,662 + 8901 mRNA_533 0.90 -0.7
1,269,674 + -0.4
1,269,797 - 1.4
1,269,805 - 1.2
1,269,806 - 0.8
1,269,925 - 0.4
1,269,946 - 0.3
1,270,081 - 1.3
1,270,090 - 1.5
1,270,111 - -1.0
1,270,113 - 0.9
1,270,154 + -0.2
1,270,158 - -0.6
1,270,158 - 1.1
1,270,162 - 0.6
1,270,163 + -0.8
1,270,164 - -1.2
1,270,166 + -0.7
1,270,171 - 0.1
1,270,171 - 0.1
1,270,176 - 0.6
1,270,177 + -0.6
1,270,178 - -0.8
1,270,182 - 0.6
1,270,186 + 1.2
1,270,188 + -0.5
1,270,296 + 0.6
1,270,310 - -0.0
1,270,315 - -1.2
1,270,326 - -0.1
1,270,330 - 0.3
1,270,338 - 0.9
1,270,384 + -0.3
1,270,458 - 8902 mRNA_534 0.10 -0.5
1,270,491 + 8902 mRNA_534 0.12 -1.7
1,270,495 + 8902 mRNA_534 0.12 -2.3
1,270,500 + 8902 mRNA_534 0.12 -0.1
1,270,623 + 8902 mRNA_534 0.18 1.1
1,270,624 - 8902 mRNA_534 0.18 -0.2
1,270,630 + 8902 mRNA_534 0.18 -1.5
1,270,631 + 8902 mRNA_534 0.18 -0.0
1,270,760 + 8902 mRNA_534 0.24 -0.4