Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_376

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_375: 8743 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927, at 870783 to 871769 8743 mRNA_376: 8744 - K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component, at 872244 to 876604 8744 mRNA_377: 8745 - KOG1515 Arylacetamide deacetylase, at 876931 to 878832 8745

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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871,374 - 8743 mRNA_375 0.60 -1.7
871,387 - 8743 mRNA_375 0.61 -0.4
871,393 + 8743 mRNA_375 0.62 -1.8
871,839 + -0.4
871,847 + -0.2
871,953 - -0.2
871,979 + -0.3
872,002 - -0.9
872,007 + -1.4
872,101 - -1.0
872,129 - 0.6
872,181 + 0.8
872,202 + 0.3
872,216 + -0.8
872,325 + -0.6
872,326 - 0.6
872,329 - 1.1
872,330 + -0.3
872,335 + -1.5
872,463 + -0.0
872,483 + -1.0
872,503 + 1.0
872,608 - -0.5
872,763 + 8744 mRNA_376 0.12 1.1
872,920 + 8744 mRNA_376 0.16 1.0
872,931 + 8744 mRNA_376 0.16 -0.1
873,387 + 8744 mRNA_376 0.26 -0.1
873,502 - 8744 mRNA_376 0.29 0.2
873,698 - 8744 mRNA_376 0.33 0.5
874,442 - 8744 mRNA_376 0.50 0.1
875,027 + 8744 mRNA_376 0.64 0.8
875,159 + 8744 mRNA_376 0.67 0.1
875,238 + 8744 mRNA_376 0.69 -0.1
875,387 - 8744 mRNA_376 0.72 -1.3
875,981 + 8744 mRNA_376 0.86 -0.1
876,104 + 8744 mRNA_376 0.89 0.4
876,104 - 8744 mRNA_376 0.89 1.6
876,393 - -0.3
876,401 - -0.3
876,651 - -0.9
876,686 + 0.3
876,824 - -1.3
876,878 - -0.5
876,911 + -0.5
876,985 + -1.1
877,003 - -1.2
877,097 - 0.8
877,181 - 8745 mRNA_377 0.13 -0.5
877,403 + 8745 mRNA_377 0.25 2.2