Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_316

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_315: 8683 - Hypothetical Protein, at 752039 to 753953 8683 mRNA_316: 8684 - K18802 DUG3 glutamine amidotransferase, at 754275 to 756026 8684 mRNA_317: 8685 - HMMPfam-DnaJ domain-PF00226,PRINTS-DnaJ domain signature-PR00625,ProSitePatterns-Nt-dnaJ domain signature.-PS00636,ProSiteProfiles-dnaJ domain profile.-PS50076,ProSiteProfiles-IQ motif profile.-PS50096,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 756228 to 757512 8685

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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753,324 + 8683 mRNA_315 0.67 -0.5
753,345 - 8683 mRNA_315 0.68 -0.6
753,476 - 8683 mRNA_315 0.75 0.2
753,607 - 8683 mRNA_315 0.82 -0.5
753,763 + -1.3
754,049 + 0.0
754,060 + 0.4
754,194 - -1.0
754,208 + -0.2
754,469 - 8684 mRNA_316 0.11 -0.4
754,502 - 8684 mRNA_316 0.13 -1.5
754,505 + 8684 mRNA_316 0.13 -0.7
754,652 + 8684 mRNA_316 0.22 0.3
754,764 - 8684 mRNA_316 0.28 0.8
754,897 - 8684 mRNA_316 0.36 -0.1
755,065 + 8684 mRNA_316 0.45 0.7
755,263 - 8684 mRNA_316 0.56 0.1
755,323 + 8684 mRNA_316 0.60 -1.0
756,084 - -0.3
756,241 - 1.1
756,254 - -2.4
756,409 - 8685 mRNA_317 0.14 -0.4
756,641 - 8685 mRNA_317 0.32 -1.6
756,817 + 8685 mRNA_317 0.46 -1.7
756,974 - 8685 mRNA_317 0.58 -0.0
757,021 + 8685 mRNA_317 0.62 -0.1