Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_289

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_288: 8656 - K00521 E1.16.1.7 ferric-chelate reductase, at 684049 to 686611 8656 mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686748 to 688788 8657 mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689147 to 690940 8658

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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685,993 - 8656 mRNA_288 0.76 2.0
686,314 + 8656 mRNA_288 0.88 -1.4
686,419 + 0.5
686,439 - -0.9
686,574 - -0.3
686,581 - 0.0
686,587 + 0.6
686,606 + 0.5
686,607 - -0.4
686,740 - -0.4
686,742 + -0.5
686,743 - -1.2
686,751 - -1.0
686,884 + -0.7
686,893 - -0.4
687,066 - 8657 mRNA_289 0.16 0.6
687,197 + 8657 mRNA_289 0.22 -0.2
687,922 + 8657 mRNA_289 0.58 -0.4
687,939 + 8657 mRNA_289 0.58 1.7
687,942 + 8657 mRNA_289 0.59 -0.0
688,080 - 8657 mRNA_289 0.65 -0.6
688,379 + 8657 mRNA_289 0.80 -0.4
688,810 - 0.5
688,834 + 1.8
688,844 + -0.1
688,999 + -0.1
689,568 + 8658 mRNA_290 0.23 -1.3