Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_265

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_264: 8632 - BLAST phosphoglycerate mutase-like protein [Sanghuangporus ..., at 636296 to 637192 8632 mRNA_265: 8633 - K00876 udk, UCK uridine kinase, at 637479 to 639717 8633 mRNA_266: 8634 - KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, at 639859 to 640522 8634

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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636,493 + 8632 mRNA_264 0.22 0.7
636,494 + 8632 mRNA_264 0.22 0.9
636,599 + 8632 mRNA_264 0.34 -0.5
636,764 + 8632 mRNA_264 0.52 -0.2
636,925 - 8632 mRNA_264 0.70 -0.0
636,936 - 8632 mRNA_264 0.71 -0.0
636,939 + 8632 mRNA_264 0.72 -0.2
637,072 + 8632 mRNA_264 0.87 -1.0
637,225 - 1.5
637,225 - -0.6
637,229 + -0.3
637,232 - 0.3
637,370 + -0.2
637,374 + -0.3
637,381 - -0.9
637,511 - 0.7
637,661 - -1.7
638,500 - 8633 mRNA_265 0.46 1.2
638,564 - 8633 mRNA_265 0.48 0.3
638,670 - 8633 mRNA_265 0.53 -0.7
638,837 - 8633 mRNA_265 0.61 1.2
638,972 - 8633 mRNA_265 0.67 -0.6
638,993 - 8633 mRNA_265 0.68 0.4
639,691 - -0.5
639,727 - -1.6
639,835 + 0.4
639,879 - 0.1
640,023 - 8634 mRNA_266 0.25 3.0
640,581 - 2.0
640,584 + 2.1
640,589 - 0.4
640,598 + -0.5