Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_201

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_200: 8568 - K15541 MPE1 protein MPE1, at 489424 to 492149 8568 mRNA_201: 8569 - K00294 E1.2.1.88 1-pyrroline-5-carboxylate dehydrogenase, at 492772 to 495021 8569 mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495941 to 499437 8570

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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492,370 - -0.7
492,372 + 0.1
492,377 - -0.4
492,504 - 0.4
492,515 - 0.2
492,521 + -0.0
492,522 - 0.5
492,526 + -0.1
492,527 + 0.3
492,535 + -0.4
492,536 - 2.1
492,552 - -0.3
492,553 - 0.2
492,682 + 0.0
492,813 - -0.3
492,822 + 0.5
492,832 + 1.7
493,255 + 8569 mRNA_201 0.21 -0.1
493,260 - 8569 mRNA_201 0.22 1.2
493,382 - 8569 mRNA_201 0.27 0.9
493,392 + 8569 mRNA_201 0.28 0.0
493,674 + 8569 mRNA_201 0.40 -0.2
493,677 + 8569 mRNA_201 0.40 0.3
493,688 - 8569 mRNA_201 0.41 0.6
493,696 + 8569 mRNA_201 0.41 1.1
494,868 - 0.3
495,030 + -0.2
495,125 - -0.1
495,147 - -0.5
495,152 + 0.3
495,155 + -0.8
495,155 - -0.6
495,157 - 0.3
495,159 - -0.0
495,162 + 0.4
495,162 + -0.1
495,168 - -0.7
495,169 - 0.9
495,177 - 0.4
495,179 + -0.5
495,180 - -0.0
495,181 + -1.4
495,181 + -1.9
495,182 + -0.4
495,182 + -1.4
495,183 + -0.2
495,186 - -0.2
495,189 + 1.2
495,192 + 1.1
495,201 - 0.1
495,209 + 0.5
495,247 + 0.3
495,495 - 1.2
495,505 - 2.3