Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_143

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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355,374 - 0.1
355,403 - -0.0
355,418 - 0.6
355,442 - 1.1
355,531 + 0.4
355,647 + -1.0
355,755 - -0.6
355,785 + -0.6
355,804 + 0.3
356,035 + 0.1
356,179 - 0.2
356,187 - 1.6
356,537 - 8511 mRNA_143 0.21 -0.4
356,609 - 8511 mRNA_143 0.25 -1.1
356,663 + 8511 mRNA_143 0.28 -1.0
356,682 + 8511 mRNA_143 0.29 -0.6
357,702 + 8511 mRNA_143 0.87 -0.6
357,818 - -0.1
357,821 - -0.1
357,848 - -0.4
357,851 - -0.6
357,968 + 0.2
357,976 + -1.7
357,977 - 0.2
357,987 - -0.6
357,987 + 2.1
357,994 + 0.0
357,997 - -0.9
358,000 - -0.9
358,000 - -0.1
358,005 - -1.4
358,005 - -0.4
358,006 - -0.8
358,006 + 0.2
358,079 - -0.8
358,123 - -0.3
358,126 - 0.7
358,131 - -0.1
358,133 - -0.0
358,133 - -0.1
358,134 - -1.1
358,141 + -0.2
358,151 + -0.3
358,156 + -0.0
358,157 + 0.8
358,157 + 1.1
358,161 + -0.9
358,254 + -0.3
358,281 - -1.8
358,290 - 0.2
358,314 + 0.1
358,432 - -0.5
358,470 - -1.3
358,513 + -0.1
358,604 - -0.4
358,609 + -0.2
358,627 - -0.1
358,640 + -0.4
358,789 + 2.6