Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_142

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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342,072 + 0.3
342,127 + -0.3
342,129 + 0.7
342,131 - 1.3
342,144 + -0.2
342,149 - 0.3
342,167 + -0.3
342,171 - 0.1
342,177 + -0.4
342,187 - 0.3
342,220 - 0.2
342,230 - -0.2
342,230 - -0.4
342,248 - -0.3
342,249 + -0.7
342,250 - 0.6
342,250 + -0.7
342,274 + -0.0
342,293 - 1.3
342,309 - -2.2
342,313 + -0.5
342,317 - -0.1
342,326 - 1.6
342,328 - -0.3
342,328 - -1.5
342,330 - 0.1
342,337 - -1.9
342,342 + -0.2
342,344 + 0.9
342,344 + 1.7
342,353 + -2.2
342,476 + -0.6
342,477 + -0.0
342,487 + 0.0
342,488 - -1.9
342,491 - -0.0
342,493 - 0.1
342,550 - -1.0
342,591 - 0.6
342,611 - 0.6
342,619 - -0.1
342,620 + -0.5
342,626 + -0.4
342,639 - 0.0
342,652 + 0.3
342,742 - -0.1
342,750 - 0.0
342,759 - -2.3
342,761 + -0.4
342,762 + 0.9
342,791 - 0.2
342,793 + 0.4
342,808 - -0.2
342,811 + -1.2
342,884 - -0.5
342,951 + -1.6
342,996 - -1.8
343,129 - -0.7
343,132 - 0.2
343,136 + 0.3
343,148 - 0.8
343,184 - -0.5
343,473 + -1.7
344,027 - -0.5
344,199 - -0.3
344,524 - 8510 mRNA_142 0.12 -1.5
344,617 + 8510 mRNA_142 0.13 -0.4
344,632 - 8510 mRNA_142 0.13 0.7
344,680 + 8510 mRNA_142 0.13 -0.8
344,966 + 8510 mRNA_142 0.15 0.3
345,239 - 8510 mRNA_142 0.18 0.9
345,394 + 8510 mRNA_142 0.19 0.4
345,419 - 8510 mRNA_142 0.19 -0.5
345,458 + 8510 mRNA_142 0.19 -0.8
345,527 - 8510 mRNA_142 0.20 -0.7
345,687 + 8510 mRNA_142 0.21 -1.1
345,741 - 8510 mRNA_142 0.22 1.0
345,764 + 8510 mRNA_142 0.22 0.6
345,784 + 8510 mRNA_142 0.22 -0.1
346,252 - 8510 mRNA_142 0.26 -0.0
346,292 + 8510 mRNA_142 0.26 0.8
346,445 - 8510 mRNA_142 0.27 -0.2
346,527 - 8510 mRNA_142 0.28 -0.5
346,605 + 8510 mRNA_142 0.28 -0.6
346,649 + 8510 mRNA_142 0.29 -1.4
346,705 - 8510 mRNA_142 0.29 0.6
346,746 + 8510 mRNA_142 0.29 -1.5
347,055 - 8510 mRNA_142 0.32 0.1
347,061 - 8510 mRNA_142 0.32 -0.3
347,068 - 8510 mRNA_142 0.32 -0.1
347,074 + 8510 mRNA_142 0.32 -0.2
347,166 - 8510 mRNA_142 0.33 -0.1
347,192 + 8510 mRNA_142 0.33 -1.0
347,193 + 8510 mRNA_142 0.33 -0.0
347,272 - 8510 mRNA_142 0.34 -0.6
347,592 - 8510 mRNA_142 0.36 1.0
347,635 - 8510 mRNA_142 0.36 0.8
347,645 + 8510 mRNA_142 0.37 0.9
347,661 - 8510 mRNA_142 0.37 1.2
347,669 + 8510 mRNA_142 0.37 -0.4
347,788 + 8510 mRNA_142 0.38 1.2
348,162 + 8510 mRNA_142 0.41 0.2
348,195 - 8510 mRNA_142 0.41 -0.4
348,328 + 8510 mRNA_142 0.42 -2.0
348,450 + 8510 mRNA_142 0.43 0.3
348,591 - 8510 mRNA_142 0.44 -0.3
348,591 - 8510 mRNA_142 0.44 -1.7
348,724 - 8510 mRNA_142 0.45 0.2
348,744 + 8510 mRNA_142 0.45 -0.5
348,820 + 8510 mRNA_142 0.46 -0.5
348,888 - 8510 mRNA_142 0.46 -0.1
348,903 - 8510 mRNA_142 0.46 0.1
348,954 - 8510 mRNA_142 0.47 0.2
349,039 - 8510 mRNA_142 0.48 -0.6
349,057 + 8510 mRNA_142 0.48 1.0
349,099 + 8510 mRNA_142 0.48 -0.9
349,383 - 8510 mRNA_142 0.50 -0.9
349,439 - 8510 mRNA_142 0.51 -0.3
349,458 + 8510 mRNA_142 0.51 -1.4
349,528 + 8510 mRNA_142 0.51 0.0
349,848 - 8510 mRNA_142 0.54 0.8
349,878 - 8510 mRNA_142 0.54 0.2
349,932 - 8510 mRNA_142 0.55 -0.4
349,936 - 8510 mRNA_142 0.55 0.1
350,006 - 8510 mRNA_142 0.55 0.3
350,023 + 8510 mRNA_142 0.55 -0.3
350,107 - 8510 mRNA_142 0.56 1.7
350,148 - 8510 mRNA_142 0.56 -0.1
350,205 - 8510 mRNA_142 0.57 -0.8
350,239 - 8510 mRNA_142 0.57 -0.5
350,350 - 8510 mRNA_142 0.58 0.1
350,384 + 8510 mRNA_142 0.58 0.8
350,414 - 8510 mRNA_142 0.58 -0.0
350,501 - 8510 mRNA_142 0.59 -0.7
350,618 + 8510 mRNA_142 0.60 -0.7
350,654 - 8510 mRNA_142 0.60 0.9
350,656 + 8510 mRNA_142 0.60 0.8
350,731 + 8510 mRNA_142 0.61 -0.6
350,751 - 8510 mRNA_142 0.61 -1.8
350,778 - 8510 mRNA_142 0.61 0.5
350,818 - 8510 mRNA_142 0.62 -0.4
351,055 + 8510 mRNA_142 0.63 -0.9
351,081 - 8510 mRNA_142 0.64 -0.4
351,224 - 8510 mRNA_142 0.65 -1.9
351,247 + 8510 mRNA_142 0.65 0.3
351,295 + 8510 mRNA_142 0.65 0.6
351,316 + 8510 mRNA_142 0.65 -0.5
351,346 - 8510 mRNA_142 0.66 -1.1
351,454 - 8510 mRNA_142 0.67 -0.3
351,516 + 8510 mRNA_142 0.67 -0.5
351,574 - 8510 mRNA_142 0.67 0.3
351,584 - 8510 mRNA_142 0.68 0.3
351,604 + 8510 mRNA_142 0.68 1.3
351,640 - 8510 mRNA_142 0.68 0.3
351,660 + 8510 mRNA_142 0.68 -1.2
351,725 + 8510 mRNA_142 0.69 -0.3
351,755 - 8510 mRNA_142 0.69 1.9
351,796 - 8510 mRNA_142 0.69 -0.3
351,802 + 8510 mRNA_142 0.69 0.9
351,990 - 8510 mRNA_142 0.71 -0.9
352,000 - 8510 mRNA_142 0.71 -0.7
352,021 - 8510 mRNA_142 0.71 0.2
352,098 - 8510 mRNA_142 0.72 -0.8
352,103 + 8510 mRNA_142 0.72 -0.3
352,106 + 8510 mRNA_142 0.72 0.0
352,120 + 8510 mRNA_142 0.72 -0.6
352,153 - 8510 mRNA_142 0.72 2.1
352,299 - 8510 mRNA_142 0.73 1.1
352,306 + 8510 mRNA_142 0.73 -0.6
352,315 + 8510 mRNA_142 0.73 -0.7
352,557 - 8510 mRNA_142 0.75 0.9
352,593 - 8510 mRNA_142 0.76 -1.1
352,593 - 8510 mRNA_142 0.76 -2.4
352,809 + 8510 mRNA_142 0.77 -0.1
352,867 + 8510 mRNA_142 0.78 -2.4
352,913 - 8510 mRNA_142 0.78 -0.4
352,917 + 8510 mRNA_142 0.78 -0.0
353,043 - 8510 mRNA_142 0.79 0.0
353,115 - 8510 mRNA_142 0.80 -0.2
353,198 + 8510 mRNA_142 0.80 0.4
353,310 - 8510 mRNA_142 0.81 -1.9
353,375 + 8510 mRNA_142 0.82 -0.6
353,607 + 8510 mRNA_142 0.84 -0.2
353,613 - 8510 mRNA_142 0.84 -0.5
353,705 + 8510 mRNA_142 0.84 -0.3
353,845 - 8510 mRNA_142 0.85 -0.8
353,855 + 8510 mRNA_142 0.85 -0.2
353,893 - 8510 mRNA_142 0.86 -0.7
353,895 + 8510 mRNA_142 0.86 -0.3
353,899 + 8510 mRNA_142 0.86 1.0
353,949 - 8510 mRNA_142 0.86 1.0
354,024 + 8510 mRNA_142 0.87 0.5
354,039 - 8510 mRNA_142 0.87 -0.6
354,076 - 8510 mRNA_142 0.87 0.4
354,146 + 8510 mRNA_142 0.88 0.8
354,172 + 8510 mRNA_142 0.88 0.0
354,186 - 8510 mRNA_142 0.88 0.4
354,222 - 8510 mRNA_142 0.88 -0.2
354,230 + 8510 mRNA_142 0.88 -0.0
354,482 + 0.2
354,653 - -1.2
354,729 - 0.1
355,099 - -0.3
355,161 - 0.1
355,374 - 0.1
355,403 - -0.0
355,418 - 0.6
355,442 - 1.1
355,531 + 0.4
355,647 + -1.0
355,755 - -0.6
355,785 + -0.6
355,804 + 0.3
356,035 + 0.1
356,179 - 0.2
356,187 - 1.6
356,537 - 8511 mRNA_143 0.21 -0.4
356,609 - 8511 mRNA_143 0.25 -1.1
356,663 + 8511 mRNA_143 0.28 -1.0
356,682 + 8511 mRNA_143 0.29 -0.6