Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_127

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304252 to 307207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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303,311 - 1.2
303,311 - 0.3
303,325 + 0.5
303,439 - -1.0
303,444 + -0.0
303,570 - -0.3
303,840 - 0.4
304,007 - -0.7
304,333 + -0.5
304,439 - 0.2
304,603 + 8495 mRNA_127 0.12 -0.1
304,933 - 8495 mRNA_127 0.23 1.3
305,053 - 8495 mRNA_127 0.27 0.1
305,064 + 8495 mRNA_127 0.27 -0.5
305,450 - 8495 mRNA_127 0.41 0.0
305,468 - 8495 mRNA_127 0.41 -0.7
305,566 - 8495 mRNA_127 0.44 0.8
305,852 + 8495 mRNA_127 0.54 -2.1
306,191 - 8495 mRNA_127 0.66 0.1
306,337 + 8495 mRNA_127 0.71 -1.3
306,834 - 8495 mRNA_127 0.87 -1.8
306,877 - 8495 mRNA_127 0.89 -0.9
306,913 + 0.7
307,185 - -0.5
307,205 - -0.2
307,285 + 0.9
307,305 - 1.3
307,482 + -0.2
307,487 + -0.6
307,515 + -0.3
307,600 - 0.4
307,629 + 0.3
307,634 + -1.9
307,719 + 1.3
307,785 - -0.3
307,886 - -0.7
308,051 + -0.1
308,064 - -0.5
308,146 + 8496 mRNA_128 0.12 -2.2