Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_98

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229785 to 233167 8465 mRNA_98: 8466 - Hypothetical Protein, at 233874 to 234659 8466 mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235594 to 240654 8467

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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232,980 + -1.8
232,995 - -1.1
233,157 - -0.2
233,237 + 1.0
233,256 - 1.2
233,256 - 0.3
233,263 - 0.4
233,276 + 0.2
233,282 - 0.4
233,290 + -1.8
233,290 + 0.3
233,290 + 0.1
233,298 - -2.5
233,298 + -0.0
233,298 - 0.0
233,301 + -1.7
233,301 - -1.0
233,301 - 0.0
233,302 + 0.9
233,315 + 0.3
233,316 - -0.2
233,316 + 0.4
233,317 - -1.3
233,317 - -0.6
233,319 - 0.0
233,320 - 1.3
233,321 + 0.7
233,321 - 0.1
233,321 - 0.1
233,323 - -0.2
233,323 - 0.3
233,324 + 0.2
233,324 + 0.8
233,325 + 1.4
233,325 - -0.3
233,326 + 0.1
233,329 + 0.1
233,332 + 0.5
233,335 + 0.1
233,336 + -1.6
233,337 + -0.2
233,337 + 0.4
233,350 + 0.0
233,350 + 1.0
233,354 - 1.4
233,359 + 0.6
233,365 - -0.4
233,365 - -0.6
233,365 + -1.0
233,375 - 0.3
233,379 + -0.3
233,383 + -0.2
233,387 - -0.2
233,404 + -0.6
233,404 + -1.2
233,408 - 1.1
233,436 - -0.9
233,436 - -0.1
233,436 - 0.5
233,437 - 0.3
233,441 + 2.3
233,442 - -0.4
233,443 - 1.4
233,444 + -1.6
233,446 - 0.6
233,448 - -0.7
233,450 + 1.4
233,451 + -0.2
233,452 + -0.2
233,459 - 1.6
233,488 - 0.2
233,491 - -1.2
233,507 + -0.1
233,512 - 0.6
233,518 - -0.3
233,520 - 0.8
233,523 + -0.1
233,529 - -1.4
233,539 - -0.0
233,541 + 0.7
233,549 + 0.3
233,551 + 0.2
233,559 - -1.2
233,560 + 0.6
233,568 + -0.9
233,571 - -2.7
233,573 + -0.8
233,613 + -0.6
233,657 - 1.7
233,706 + 0.5
233,726 + -0.3
233,851 - -1.0
233,852 + -0.6
233,859 - -0.1
233,865 + 1.2
234,006 - 8466 mRNA_98 0.17 -1.4
234,139 - 8466 mRNA_98 0.34 -0.5
234,284 - 8466 mRNA_98 0.52 -0.8
234,293 + 8466 mRNA_98 0.53 -0.4
234,459 + 8466 mRNA_98 0.74 -0.0
234,600 + 1.0
234,613 + 2.3
234,733 - -0.8
234,750 + -1.3
234,765 + -0.6
234,773 - -1.3
234,904 - -0.1
234,909 + 1.5
234,911 - 2.2
234,914 + -1.1
234,915 - 0.1
234,919 + -0.4
234,920 + 0.1
234,923 - -0.7
234,926 + -1.0
234,926 + -0.6
234,927 - 0.6
234,932 - -0.2
234,935 + 0.4
234,936 + -0.3
234,940 - 0.8
234,941 + -1.9
234,941 + -0.4
234,942 + 0.9
234,943 + -0.2
234,970 - 0.1
234,984 - 0.3
234,985 + -0.3
234,991 - -1.2
234,999 + -1.1
234,999 + 0.8
235,005 + -0.2
235,007 - -1.6
235,011 - -0.0
235,013 + 0.1
235,016 - -0.1
235,016 - -0.3
235,019 - 1.0
235,019 + -0.6
235,024 + 0.7
235,026 - -1.9
235,040 - 0.1
235,041 + 0.3
235,048 - 0.1
235,057 - -1.0
235,061 - 0.8
235,062 - 0.1
235,072 - 0.7
235,077 + -0.1
235,078 - -0.7
235,080 - -0.7
235,080 - -0.5
235,081 + -0.4
235,081 + -0.7
235,085 - -0.1
235,085 - -1.1
235,089 - -1.0
235,091 + -0.1
235,092 - 0.2
235,096 + -1.7
235,104 + 0.8
235,135 - -1.1
235,141 - -0.9
235,141 - 0.8
235,144 - 0.0
235,146 + -1.7
235,147 + -2.4
235,147 - -0.4
235,148 - -0.0
235,150 - 0.1
235,152 - -0.4
235,152 + -0.6
235,160 + 0.8
235,165 - -0.8
235,183 + 1.0
235,195 - 0.6
235,206 - 1.0
235,211 + 0.2
235,211 + 0.5
235,212 + -0.4
235,259 - -0.4
235,260 - 2.4
235,276 - 1.1
235,277 - -1.1
235,279 - -1.1
235,280 + -0.6
235,280 - 0.1
235,281 + 0.2
235,281 + -0.1
235,290 - 1.2
235,291 - 0.2
235,292 + -0.3
235,293 - 1.0
235,297 - 0.7
235,299 - -0.2
235,301 - -0.1
235,302 + 0.4
235,308 - 0.3
235,308 + -1.2
235,311 - -1.1
235,314 - -1.1
235,470 + 0.2
235,486 - -0.0
235,495 + 0.9
235,616 - -0.2