Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_68

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156273 to 158120 8435 mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158685 to 163751 8436 mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163948 to 165826 8437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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157,835 - 8435 mRNA_67 0.85 -0.1
157,966 - -0.7
158,031 + -0.0
158,054 + 0.0
158,069 - 0.1
158,176 + -0.9
158,177 - 2.1
158,179 - 0.2
158,183 - 0.3
158,192 - 1.1
158,193 + 0.1
158,193 + -0.5
158,196 - 1.5
158,296 + -0.9
158,320 - 0.6
158,333 + -0.4
158,341 - -0.8
158,347 - -0.7
158,387 + -0.2
158,636 + 0.1
158,639 - -1.3
158,650 - 0.4
158,678 + -0.7
158,949 - -0.9
159,101 - 0.1
159,853 - 8436 mRNA_68 0.23 0.3
161,440 - 8436 mRNA_68 0.54 0.1
162,603 + 8436 mRNA_68 0.77 -0.4
162,916 - 8436 mRNA_68 0.84 -0.1
163,919 + 0.9
163,920 + 2.4
164,051 - 0.3
164,314 + 8437 mRNA_69 0.19 -0.9
164,349 - 8437 mRNA_69 0.21 -0.3