Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_46

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108511 to 110701 8413 mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111074 to 114249 8414 mRNA_47: 8415 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 114589 to 115599 8415

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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110,418 - 8413 mRNA_45 0.87 -0.4
110,441 - 8413 mRNA_45 0.88 -0.1
110,580 + -0.3
110,591 - 1.1
110,608 + 0.8
110,618 + -0.8
110,727 - -1.5
110,735 - -0.6
110,737 - 0.6
110,741 - -1.1
110,773 + -0.4
110,777 + -0.2
110,788 + 0.1
110,790 + -0.5
110,796 - -0.8
110,799 - -1.3
110,806 + 0.6
110,806 - -0.3
110,809 + -0.8
110,817 - 0.4
110,819 - -0.2
110,821 - -0.5
110,831 + 0.3
110,855 + -0.3
110,916 + -1.6
110,934 - 0.1
110,936 - -2.3
110,948 + -0.5
110,962 + -0.1
110,963 + 0.8
110,965 + 1.4
110,972 - -0.0
110,973 + -1.0
110,978 - 0.1
110,980 - 0.5
110,982 + -0.6
110,991 - -0.2
111,000 + -1.2
111,122 - -1.1
111,122 - -0.7
111,123 + 0.8
111,139 - 0.0
111,259 - -0.3
111,645 - 8414 mRNA_46 0.18 1.1
111,901 + 8414 mRNA_46 0.26 0.1
112,062 - 8414 mRNA_46 0.31 0.1
112,099 - 8414 mRNA_46 0.32 0.4
112,181 - 8414 mRNA_46 0.35 -0.2
112,191 + 8414 mRNA_46 0.35 -1.6
112,332 + 8414 mRNA_46 0.40 -0.7
112,499 + 8414 mRNA_46 0.45 0.7
112,504 - 8414 mRNA_46 0.45 -1.6
112,513 - 8414 mRNA_46 0.45 0.1
112,520 - 8414 mRNA_46 0.46 0.5
112,560 - 8414 mRNA_46 0.47 -0.2
112,600 - 8414 mRNA_46 0.48 -0.4
112,921 + 8414 mRNA_46 0.58 0.3
112,938 - 8414 mRNA_46 0.59 -2.1
113,031 - 8414 mRNA_46 0.62 1.2
113,122 - 8414 mRNA_46 0.64 -0.1
113,215 - 8414 mRNA_46 0.67 -0.3
113,271 + 8414 mRNA_46 0.69 -0.7
113,281 - 8414 mRNA_46 0.69 1.1
113,293 - 8414 mRNA_46 0.70 0.1
113,368 + 8414 mRNA_46 0.72 0.8
113,390 - 8414 mRNA_46 0.73 -0.1
113,392 - 8414 mRNA_46 0.73 0.4
113,474 + 8414 mRNA_46 0.76 0.3
113,517 - 8414 mRNA_46 0.77 2.3
113,580 - 8414 mRNA_46 0.79 0.1
113,624 + 8414 mRNA_46 0.80 -0.2
113,665 - 8414 mRNA_46 0.82 -0.3
113,686 - 8414 mRNA_46 0.82 -0.7
113,715 - 8414 mRNA_46 0.83 -0.3
113,851 + 8414 mRNA_46 0.87 -1.6
113,858 + 8414 mRNA_46 0.88 -0.1
114,191 + -0.8
114,192 + 0.2
114,197 + -1.6
114,265 + -0.5
114,279 + -1.1
114,605 + -0.4
114,855 - 8415 mRNA_47 0.26 -0.1
114,932 + 8415 mRNA_47 0.34 -1.0
114,935 - 8415 mRNA_47 0.34 -0.8
115,004 + 8415 mRNA_47 0.41 -1.2
115,174 - 8415 mRNA_47 0.58 0.1