Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_19

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50473 to 51921 8386 mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52301 to 54654 8387 mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55031 to 59299 8388

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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51,432 - 8386 mRNA_18 0.66 -1.0
51,550 + 8386 mRNA_18 0.74 -0.5
51,561 - 8386 mRNA_18 0.75 -2.7
51,562 + 8386 mRNA_18 0.75 0.1
51,654 + 8386 mRNA_18 0.82 0.7
51,655 - 8386 mRNA_18 0.82 0.3
51,845 - -0.9
51,845 + -0.4
51,846 + 2.5
51,962 - -0.2
52,120 + -0.3
52,128 - -0.1
52,132 - -0.1
52,157 + -0.3
52,815 + 8387 mRNA_19 0.22 1.4
52,819 - 8387 mRNA_19 0.22 -0.7
52,852 - 8387 mRNA_19 0.23 0.0
52,876 - 8387 mRNA_19 0.24 0.6
52,889 - 8387 mRNA_19 0.25 -1.9
52,897 + 8387 mRNA_19 0.25 -1.1
52,952 - 8387 mRNA_19 0.28 0.2
52,970 + 8387 mRNA_19 0.28 0.9
53,847 + 8387 mRNA_19 0.66 -1.0
53,892 - 8387 mRNA_19 0.68 0.1
53,900 + 8387 mRNA_19 0.68 0.0
53,910 + 8387 mRNA_19 0.68 0.4
53,912 - 8387 mRNA_19 0.68 -0.2
54,110 + 8387 mRNA_19 0.77 0.6
54,165 - 8387 mRNA_19 0.79 0.7
54,210 + 8387 mRNA_19 0.81 -0.5
54,466 + -0.6
54,566 + 0.2
54,569 - 0.7
54,595 - 0.3
54,602 - -1.2
54,605 + 0.4
54,629 + 0.4
54,751 - -0.3
54,754 - -0.2
54,754 - -0.4
54,758 - 0.1
54,760 + 0.4
54,761 + 0.1
54,765 - 0.4
54,767 + -0.1
54,768 - -2.5
54,776 - -0.6
54,777 + 0.9
54,777 + 0.1
54,782 + -0.9
54,787 + -0.1
54,913 - 0.9
54,917 - -0.4
54,947 + 1.2
54,947 + -0.6
54,952 - 0.9
55,100 + -0.4
55,379 - -0.8
55,383 + -0.4