Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8275

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8274: 16642 - KOG4080 Mitochondrial ribosomal protein L32, at 819510 to 820015 16642 mRNA_8275: 16643 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 820228 to 822470 16643 mRNA_8276: 16644 - K06630 YWHAE 14-3-3 protein epsilon, at 822982 to 824358 16644

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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819,279 - -0.3
819,312 + -1.2
819,317 + 0.2
820,023 - -0.5
820,176 + -0.2
820,579 - 16643 mRNA_8275 0.16 0.9
820,625 - 16643 mRNA_8275 0.18 0.1
821,382 + 16643 mRNA_8275 0.51 0.3
821,618 + 16643 mRNA_8275 0.62 -0.5
821,665 - 16643 mRNA_8275 0.64 0.1
821,770 - 16643 mRNA_8275 0.69 0.7
821,911 - 16643 mRNA_8275 0.75 -2.7
821,924 - 16643 mRNA_8275 0.76 -0.4
822,191 - 16643 mRNA_8275 0.88 -0.6
822,211 - 16643 mRNA_8275 0.88 -0.0
822,229 - 16643 mRNA_8275 0.89 0.4
822,234 + 16643 mRNA_8275 0.89 0.0
822,369 + -0.1
822,374 + -0.6
822,395 - 1.5
822,487 - 2.5
822,525 + -0.3
822,661 + -0.4
822,763 - -0.8
822,776 - 0.9
822,776 - 0.2
822,785 + -1.0
822,791 + 0.6
822,795 + -0.6
822,796 - 0.6
822,800 - -0.4
822,804 - -0.5
822,938 - -0.1
822,940 - -0.8
822,947 + 0.9
822,955 - -1.0
822,955 + -0.3
822,956 - -1.1
822,969 + -0.3
822,969 + 0.6
822,973 + -0.3
823,080 - -0.2
823,083 + -0.5
823,085 - 0.8
823,094 - -1.0
823,096 - 0.0
823,104 + 0.1
823,108 + -0.3
823,110 + 0.1
823,110 + -0.5
823,115 - 0.2
823,116 - -0.1
823,116 - 0.0
823,122 + 16644 mRNA_8276 0.10 0.7
823,137 - 16644 mRNA_8276 0.11 0.3
823,144 + 16644 mRNA_8276 0.12 -0.4
823,233 - 16644 mRNA_8276 0.18 -0.3
823,254 + 16644 mRNA_8276 0.20 0.2
823,272 - 16644 mRNA_8276 0.21 -0.1
823,275 - 16644 mRNA_8276 0.21 -0.3
823,280 + 16644 mRNA_8276 0.22 -0.1
823,291 - 16644 mRNA_8276 0.22 0.3
823,307 + 16644 mRNA_8276 0.24 -0.2
823,409 - 16644 mRNA_8276 0.31 -0.6