Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8230

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720080 to 721710 16597 mRNA_8230: 16598 - K09668 LARGE glycosyltransferase-like protein LARGE, at 722627 to 724673 16598 mRNA_8231: 16599 - KOG0927 Predicted transporter (ABC superfamily), at 725179 to 727142 16599

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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721,755 - -2.4
721,764 + -1.0
721,789 + -0.4
721,790 - 0.1
721,798 + 0.2
721,798 + -0.2
721,800 + 0.4
721,803 - -1.5
721,810 - -0.3
721,817 + 0.1
721,886 + -0.5
721,890 - 0.5
721,942 - -2.0
721,949 + -0.4
721,955 - -0.7
721,960 - 0.0
721,967 + -1.3
721,977 + -0.2
722,068 - 0.6
722,076 + -3.0
722,078 + 0.3
722,079 + -1.0
722,079 + -0.1
722,092 - -0.0
722,098 - -0.7
722,099 + 0.0
722,099 - -0.8
722,107 - 0.3
722,109 - -0.3
722,115 - 0.3
722,116 + -0.2
722,116 + 0.0
722,154 - -0.5
722,156 + 0.5
722,156 - -0.9
722,157 + -0.7
722,173 - 0.5
722,178 + 1.3
722,179 + -0.8
722,183 + -0.8
722,184 + -0.2
722,184 + -1.6
722,187 - -0.7
722,189 + -0.1
722,194 - 0.4
722,197 + -0.1
722,198 + -0.5
722,201 + 0.6
722,204 - -0.3
722,212 - 0.6
722,222 - -1.3
722,225 - 0.4
722,238 + -0.2
722,265 + -0.3
722,270 - 0.1
722,278 - -0.1
722,285 + 1.4
722,290 + -0.0
722,310 - -1.4
722,346 + -0.3
722,384 - -0.9
722,397 + 0.9
722,411 - -1.5
722,412 + 0.7
722,420 - -0.0
722,421 + 0.2
722,431 + -0.6
722,432 + 0.4
722,434 - 0.4
722,711 + 0.9
722,866 + 16598 mRNA_8230 0.12 -2.3
723,279 - 16598 mRNA_8230 0.32 1.3
723,292 - 16598 mRNA_8230 0.32 -1.6
723,305 - 16598 mRNA_8230 0.33 0.0
723,312 + 16598 mRNA_8230 0.33 0.3
723,563 + 16598 mRNA_8230 0.46 -0.6
723,725 + 16598 mRNA_8230 0.54 -0.7
723,728 - 16598 mRNA_8230 0.54 -0.3
724,317 - 16598 mRNA_8230 0.83 0.6
724,584 - 0.4
724,753 - -0.6
724,908 + -2.3
724,914 - -0.2
724,917 - 1.0
724,923 + 0.3
725,046 + 0.1
725,094 - -1.6
725,191 - 0.6
725,210 + 0.3
725,238 - 0.1
725,241 - 0.1
725,363 + -0.3
725,641 + 16599 mRNA_8231 0.24 -0.5
725,670 - 16599 mRNA_8231 0.25 -0.2