Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8155

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539197 to 540895 16522 mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541110 to 545271 16523 mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545872 to 548769 16524

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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540,511 + 16522 mRNA_8154 0.77 0.8
540,537 - 16522 mRNA_8154 0.79 -0.5
540,650 + 16522 mRNA_8154 0.86 0.1
540,854 + -0.4
540,899 + 0.5
540,916 + -0.1
541,339 + -0.3
542,308 + 16523 mRNA_8155 0.29 -0.4
542,684 + 16523 mRNA_8155 0.38 0.7
543,206 - 16523 mRNA_8155 0.50 -0.8
543,696 + 16523 mRNA_8155 0.62 -0.6
543,751 - 16523 mRNA_8155 0.63 0.9
544,342 - 16523 mRNA_8155 0.78 0.6
544,419 - 16523 mRNA_8155 0.80 -0.5
544,581 - 16523 mRNA_8155 0.83 -0.1
544,713 - 16523 mRNA_8155 0.87 0.6
544,769 - 16523 mRNA_8155 0.88 -1.7
544,872 - -0.6
544,880 + -0.3
545,039 - 0.4
545,180 - -0.0
545,342 + 0.6
545,459 + 0.8
545,470 + -1.2
545,490 - -1.0
545,649 - -0.2
545,710 + -1.5
545,778 - -0.8
545,784 - 0.2
545,786 - -1.0
545,905 + -0.1
546,099 + -0.4
546,251 + 16524 mRNA_8156 0.13 -0.5