Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8110

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8109: 16477 - K00679 E2.3.1.158 phospholipid-diacylglycerol acyltransferase, at 434477 to 437050 16477 mRNA_8110: 16478 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 437598 to 439156 16478 mRNA_8111: 16479 - HMMPfam-CTD kinase subunit gamma CTK3-PF12243,HMMPfam-CTD kinase subunit gamma CTK3 C-terminus-PF12350,ProSiteProfiles-CID domain profile.-PS51391, at 439350 to 440597 16479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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436,599 + 16477 mRNA_8109 0.82 -0.0
436,722 + 16477 mRNA_8109 0.87 0.5
436,865 - -0.1
436,953 - -0.4
436,962 - 0.8
437,009 - -0.4
437,051 + -0.5
437,068 + -0.9
437,140 - -1.0
437,167 - 0.2
437,182 + -0.4
437,185 + -0.3
437,190 - 1.3
437,191 + -1.5
437,195 + -1.0
437,203 + -0.9
437,204 - 0.7
437,207 - -0.8
437,208 - 0.3
437,210 - -0.4
437,213 - -0.1
437,238 - -0.4
437,253 + 0.2
437,272 - -0.2
437,278 + -0.4
437,280 + -0.3
437,298 - -1.4
437,306 + -1.1
437,309 + 1.1
437,310 + 0.5
437,337 + -0.1
437,338 - -1.0
437,365 + -1.6
437,379 + -0.3
437,382 + -0.2
437,382 - 1.0
437,390 - -0.7
437,395 + -0.3
437,395 - 0.2
437,407 - -0.1
437,413 + -1.0
437,421 - -0.3
437,423 - -0.6
437,425 + 1.3
437,426 + -0.4
437,428 + -0.4
437,470 + -2.5
437,474 - -1.0
437,477 + -0.2
437,483 - 0.7
437,485 - -0.3
437,490 + -1.1
437,496 + 0.3
437,500 + -0.2
437,508 + 0.2
437,512 + 1.0
437,516 + 0.7
437,518 + -0.1
437,521 + 0.1
437,527 - 0.9
437,529 - 0.0
437,533 + -0.1
437,539 - -0.6
437,539 + -0.3
437,546 + -0.5
437,570 - -0.4
437,594 + 0.9
437,676 - 1.2
437,688 + -0.1
437,737 - 0.1
437,830 + 16478 mRNA_8110 0.15 -0.3
437,834 + 16478 mRNA_8110 0.15 -0.1
437,976 - 16478 mRNA_8110 0.24 -0.4
437,997 - 16478 mRNA_8110 0.26 -0.4
438,154 - 16478 mRNA_8110 0.36 0.3
438,327 - 16478 mRNA_8110 0.47 0.7
439,177 - -1.7
439,283 - -1.2
439,298 + 0.8