Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8104

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8103: 16471 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 421864 to 423445 16471 mRNA_8104: 16472 - Hypothetical Protein, at 423504 to 424497 16472 mRNA_8105: 16473 - Hypothetical Protein, at 424921 to 425494 16473

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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422,524 + 16471 mRNA_8103 0.42 -0.8
422,607 - 16471 mRNA_8103 0.47 0.4
422,619 + 16471 mRNA_8103 0.48 0.1
422,628 - 16471 mRNA_8103 0.48 -0.1
422,924 + 16471 mRNA_8103 0.67 0.8
423,069 + 16471 mRNA_8103 0.76 -1.3
423,214 - 16471 mRNA_8103 0.85 -0.1
423,349 + 0.4
423,384 + -0.4
423,494 - 0.1
423,499 - -0.7
423,502 - 0.3
423,668 - 16472 mRNA_8104 0.16 0.8
423,692 + 16472 mRNA_8104 0.19 0.0
423,856 - 16472 mRNA_8104 0.35 -0.7
423,994 - 16472 mRNA_8104 0.49 -0.8
424,408 + 0.7
424,464 + 1.3
424,551 + -0.8
424,563 - -1.4
424,580 - 0.2
424,580 + 0.5
424,581 + -1.5
424,626 - -1.5
424,660 - 0.0
424,660 - -0.6
424,676 + -1.0
424,692 + -0.5
424,698 + -1.4
424,700 - 0.0
424,709 - 0.5
424,714 - 0.3
424,721 - 0.5
424,732 + -0.3
424,733 + -0.1
424,739 + -0.3
424,750 - -0.3
424,751 + 0.7
424,753 + 1.2
424,755 - 0.3
424,756 + -0.9
424,757 + -0.6
424,761 - -0.7
424,762 + -0.1
424,764 + 0.4
424,768 + 0.4
424,772 + 0.3
424,775 - -0.5
424,795 - 0.2
424,812 + 0.3
424,829 + -1.0
424,847 - -0.7
424,848 - 0.7
424,892 + -1.1
424,899 + -0.4
424,906 + -0.5
424,910 - 0.4
424,913 + 0.1
424,918 - 0.6
424,952 + -2.2
424,971 - -0.6
425,036 + 16473 mRNA_8105 0.20 -0.2
425,039 + 16473 mRNA_8105 0.21 0.9
425,117 + 16473 mRNA_8105 0.34 -0.1
425,175 + 16473 mRNA_8105 0.44 -0.4
425,194 + 16473 mRNA_8105 0.48 -0.4
425,194 - 16473 mRNA_8105 0.48 -0.8
425,199 - 16473 mRNA_8105 0.48 0.2
425,202 - 16473 mRNA_8105 0.49 -1.7
425,218 + 16473 mRNA_8105 0.52 0.1
425,246 - 16473 mRNA_8105 0.57 1.4
425,308 - 16473 mRNA_8105 0.67 2.4
425,341 - 16473 mRNA_8105 0.73 -0.9
425,343 - 16473 mRNA_8105 0.74 -0.3
425,368 - 16473 mRNA_8105 0.78 -0.4
425,378 - 16473 mRNA_8105 0.80 0.4
425,385 + 16473 mRNA_8105 0.81 0.1
425,419 - 16473 mRNA_8105 0.87 -0.6
425,426 - 16473 mRNA_8105 0.88 -0.0
425,497 - -0.7