Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8067

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8066: 16434 - K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18, at 341792 to 345856 16434 mRNA_8067: 16435 - K12399 AP3S AP-3 complex subunit sigma, at 346568 to 347476 16435 mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347734 to 349027 16436

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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345,866 + 0.6
346,030 - -1.1
346,117 - 0.6
346,124 + 1.7
346,124 + -0.0
346,130 + -0.5
346,161 + -0.6
346,258 - -1.9
346,280 - -1.5
346,287 - 1.2
346,288 + 1.1
346,439 + -0.3
346,445 - 0.9
346,453 + 1.4
346,458 - 0.8
346,462 - 0.0
346,470 - -0.2
346,472 - -2.0
346,541 + -0.5
346,542 - -1.0
347,015 + 16435 mRNA_8067 0.49 0.4
347,088 + 16435 mRNA_8067 0.57 -0.6
347,286 + 16435 mRNA_8067 0.79 -0.0
347,476 - -0.4
347,504 + 0.3
347,563 + -1.0
347,658 - 0.6
347,660 + -0.9
347,674 - -0.3
347,754 + 0.3
347,772 - 1.0
347,779 + -0.9
347,798 + 1.0
347,799 - 1.0
347,918 - 16436 mRNA_8068 0.14 -1.1
347,920 - 16436 mRNA_8068 0.14 0.1
347,930 - 16436 mRNA_8068 0.15 0.7
347,970 + 16436 mRNA_8068 0.18 1.2
347,973 + 16436 mRNA_8068 0.18 0.8
347,986 + 16436 mRNA_8068 0.19 1.3
348,013 + 16436 mRNA_8068 0.22 -0.7
348,258 - 16436 mRNA_8068 0.40 -0.5
348,296 + 16436 mRNA_8068 0.43 0.0
348,393 - 16436 mRNA_8068 0.51 -0.5