Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8025

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233351 to 234544 16392 mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235031 to 239261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239573 to 243561 16394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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234,578 - -0.3
234,578 - -0.5
234,579 - 0.4
234,600 - 1.0
234,600 - -1.5
234,600 - 0.7
234,600 - -0.4
234,605 + 0.5
234,610 - 0.8
234,616 - 0.2
234,617 + -0.3
234,621 - -1.3
234,625 - 0.4
234,736 - 0.0
234,739 - 0.8
234,741 + -0.8
234,772 - -0.6
234,880 - 0.6
234,913 + -0.5
235,036 - -1.0
235,053 - -0.2
235,072 + -0.1
235,174 + 0.7
235,467 - 16393 mRNA_8025 0.10 0.8
235,484 + 16393 mRNA_8025 0.11 -1.0
235,498 + 16393 mRNA_8025 0.11 -0.5
235,619 - 16393 mRNA_8025 0.14 0.4
235,663 + 16393 mRNA_8025 0.15 -0.6
235,774 - 16393 mRNA_8025 0.18 0.1
236,604 + 16393 mRNA_8025 0.37 -1.1
236,641 - 16393 mRNA_8025 0.38 -0.6
237,049 - 16393 mRNA_8025 0.48 -0.4
238,058 + 16393 mRNA_8025 0.72 -1.6
238,314 - 16393 mRNA_8025 0.78 -1.1
238,482 - 16393 mRNA_8025 0.82 -0.4
238,894 - -1.8
238,928 - 0.0
239,064 + 1.1
239,345 + -1.5
239,352 + -0.1
239,353 + 0.6
239,357 + -0.4
239,374 + 0.3
239,484 + -0.3
239,490 - 0.1
239,490 - -0.4
239,496 - -0.1
239,507 - -1.0
239,511 - -0.3
239,525 + 0.4
239,534 + -0.2
239,631 - -0.2
239,678 + -1.7
239,698 + -0.4
239,837 + -0.2
239,842 + -2.5
239,843 + -0.0
239,848 - 0.4
239,849 + 0.5
239,866 - -2.4
239,979 + 16394 mRNA_8026 0.10 -0.0
240,060 + 16394 mRNA_8026 0.12 0.2
240,092 + 16394 mRNA_8026 0.13 -0.1
240,125 - 16394 mRNA_8026 0.14 0.4