Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8007

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8006: 16374 - Hypothetical Protein, at 197115 to 197847 16374 mRNA_8007: 16375 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 198335 to 201051 16375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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197,380 - 16374 mRNA_8006 0.36 -0.2
197,384 - 16374 mRNA_8006 0.37 -1.0
197,512 - 16374 mRNA_8006 0.54 0.6
197,544 + 16374 mRNA_8006 0.59 0.7
197,556 - 16374 mRNA_8006 0.60 0.2
197,655 + 16374 mRNA_8006 0.74 1.1
197,846 + 1.0
197,971 - -2.0
197,974 - -0.9
197,976 - -1.9
197,986 + 0.4
197,986 + 0.4
197,992 - 0.4
198,003 - -0.3
198,013 + 0.5
198,122 + -1.5
198,126 - -0.8
198,186 + 0.8
198,825 + 16375 mRNA_8007 0.18 0.0
198,870 - 16375 mRNA_8007 0.20 -0.6
198,874 + 16375 mRNA_8007 0.20 -0.5
198,875 - 16375 mRNA_8007 0.20 -0.3
198,993 + 16375 mRNA_8007 0.24 0.2
198,999 - 16375 mRNA_8007 0.24 -0.4
199,220 + 16375 mRNA_8007 0.33 -0.2
199,612 + 16375 mRNA_8007 0.47 -0.6
199,628 - 16375 mRNA_8007 0.48 -0.3
199,845 + 16375 mRNA_8007 0.56 -1.0
199,861 - 16375 mRNA_8007 0.56 -0.3
199,931 - 16375 mRNA_8007 0.59 -0.1
200,013 - 16375 mRNA_8007 0.62 -0.5
200,016 + 16375 mRNA_8007 0.62 -0.1
200,036 - 16375 mRNA_8007 0.63 0.6
200,321 + 16375 mRNA_8007 0.73 -0.5
200,470 + 16375 mRNA_8007 0.79 0.6
200,479 + 16375 mRNA_8007 0.79 -0.2
200,616 - 16375 mRNA_8007 0.84 -0.5
200,757 + 16375 mRNA_8007 0.89 0.1
200,787 - -0.4
200,909 - -0.7
200,952 + 1.3
200,954 + -2.9
201,083 - -0.5
201,094 + 0.1
201,098 + -1.0
201,110 + -0.5
201,247 - 1.4
201,386 + 0.1
201,389 - 1.3
201,396 - -0.0
201,396 - 0.7
201,398 - -0.0
201,410 + -0.2
201,413 - -1.2
201,415 - 0.1
201,420 + -0.5
201,424 + -0.2
201,424 + 1.0
201,563 - 0.4
201,563 - 1.7
201,563 - 2.2
201,563 - -0.4
201,584 + 0.4
201,584 - -0.9