Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7688

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7687: 16055 - SUPERFAMILY--SSF48371, at 838504 to 840672 16055 mRNA_7688: 16056 - Hypothetical Protein, at 840776 to 844586 16056 mRNA_7689: 16057 - BLAST triacylglycerol lipase [Pochonia chlamydosporia 170], at 844796 to 845727 16057

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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839,776 - 16055 mRNA_7687 0.59 -0.1
839,893 - 16055 mRNA_7687 0.64 0.4
839,893 - 16055 mRNA_7687 0.64 0.0
839,901 + 16055 mRNA_7687 0.64 0.0
839,966 - 16055 mRNA_7687 0.67 -0.4
839,988 + 16055 mRNA_7687 0.68 -0.4
840,006 - 16055 mRNA_7687 0.69 0.1
840,297 - 16055 mRNA_7687 0.83 -0.0
840,337 + 16055 mRNA_7687 0.85 0.3
840,619 - -2.2
840,623 - -0.4
840,623 - -0.3
840,624 + 0.6
840,626 - -0.7
840,627 + -1.4
840,774 + 0.5
840,781 + 0.7
840,883 - -0.1
840,920 + 0.2
841,048 - -0.7
841,217 - 16056 mRNA_7688 0.12 -1.3
841,329 - 16056 mRNA_7688 0.15 0.9
841,364 - 16056 mRNA_7688 0.15 1.6
841,503 - 16056 mRNA_7688 0.19 -0.6
841,542 - 16056 mRNA_7688 0.20 1.6
841,604 + 16056 mRNA_7688 0.22 1.6
841,651 + 16056 mRNA_7688 0.23 0.5
841,661 - 16056 mRNA_7688 0.23 0.8
841,678 + 16056 mRNA_7688 0.24 -0.0
841,708 - 16056 mRNA_7688 0.24 -1.9
841,776 - 16056 mRNA_7688 0.26 1.5
841,776 - 16056 mRNA_7688 0.26 -0.5
841,841 + 16056 mRNA_7688 0.28 -1.1
841,925 - 16056 mRNA_7688 0.30 0.4
841,940 + 16056 mRNA_7688 0.31 -0.0
842,047 - 16056 mRNA_7688 0.33 -0.2
842,047 - 16056 mRNA_7688 0.33 -1.0
842,213 - 16056 mRNA_7688 0.38 0.4
842,221 - 16056 mRNA_7688 0.38 -0.7
842,356 - 16056 mRNA_7688 0.41 -1.1
842,514 - 16056 mRNA_7688 0.46 0.2
842,539 - 16056 mRNA_7688 0.46 0.4
842,660 - 16056 mRNA_7688 0.49 0.5
842,678 - 16056 mRNA_7688 0.50 0.8
842,834 - 16056 mRNA_7688 0.54 -0.2
842,855 + 16056 mRNA_7688 0.55 -0.5
842,917 - 16056 mRNA_7688 0.56 -0.5
842,987 + 16056 mRNA_7688 0.58 -2.7
843,062 + 16056 mRNA_7688 0.60 -0.8
843,097 - 16056 mRNA_7688 0.61 -1.6
843,139 + 16056 mRNA_7688 0.62 0.4
843,139 + 16056 mRNA_7688 0.62 2.3
843,139 + 16056 mRNA_7688 0.62 1.3
843,238 + 16056 mRNA_7688 0.65 0.7
843,257 + 16056 mRNA_7688 0.65 -0.1
843,676 - 16056 mRNA_7688 0.76 0.2
843,717 + 16056 mRNA_7688 0.77 -0.1
843,731 - 16056 mRNA_7688 0.78 -0.0
843,773 - 16056 mRNA_7688 0.79 -0.9
843,795 - 16056 mRNA_7688 0.79 1.9
843,801 - 16056 mRNA_7688 0.79 -1.0
843,878 + 16056 mRNA_7688 0.81 -1.9
843,993 + 16056 mRNA_7688 0.84 1.0
844,075 - 16056 mRNA_7688 0.87 -1.5
844,197 - 16056 mRNA_7688 0.90 -1.4
844,237 - 1.3
844,516 + -0.4
844,521 - -1.5
844,585 + -0.9
844,592 - -0.3
844,713 - -0.1
845,021 + 16057 mRNA_7689 0.24 -0.0
845,154 + 16057 mRNA_7689 0.38 0.8
845,157 - 16057 mRNA_7689 0.39 0.2
845,281 + 16057 mRNA_7689 0.52 0.2
845,370 - 16057 mRNA_7689 0.62 1.6
845,373 - 16057 mRNA_7689 0.62 -0.7
845,510 - 16057 mRNA_7689 0.77 0.7
845,586 + 16057 mRNA_7689 0.85 1.8