Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7554

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547720 to 548858 15921 mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548985 to 552468 15922 mRNA_7555: 15923 - K00463 IDO, INDO indoleamine 2,3-dioxygenase, at 552807 to 554579 15923

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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548,002 - 15921 mRNA_7553 0.25 0.3
548,005 - 15921 mRNA_7553 0.25 1.1
548,006 + 15921 mRNA_7553 0.25 0.9
548,022 + 15921 mRNA_7553 0.27 -1.2
548,472 + 15921 mRNA_7553 0.66 -0.5
548,509 - 15921 mRNA_7553 0.69 -1.0
548,888 - -0.3
549,301 + -0.6
549,941 - 15922 mRNA_7554 0.27 0.6
552,162 + 0.3
552,288 + 1.0
552,296 - 0.8
552,437 - 0.3
552,495 + -0.5
552,515 + -0.4
552,879 - 0.3
552,914 + -0.0
552,914 - -0.4
553,148 + 15923 mRNA_7555 0.19 0.6
553,193 + 15923 mRNA_7555 0.22 -0.1
553,207 + 15923 mRNA_7555 0.23 0.3
553,432 - 15923 mRNA_7555 0.35 1.5