Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7532

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7531: 15899 - K14001 SIL1, SLS1 nucleotide exchange factor SIL1, at 504183 to 505474 15899 mRNA_7532: 15900 - K01896 ACSM medium-chain acyl-CoA synthetase, at 505603 to 507822 15900 mRNA_7533: 15901 - K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2, at 507910 to 511338 15901

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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505,234 + 15899 mRNA_7531 0.81 -1.3
505,475 + -1.1
505,476 - -0.6
505,476 - 0.8
505,491 + 0.4
505,493 - 0.2
505,494 - 0.7
505,499 + -2.5
505,510 - 0.4
505,515 - -0.0
505,519 + 0.2
505,521 - -0.5
505,529 - -0.4
505,582 + 0.6
506,048 - 15900 mRNA_7532 0.20 -0.4
506,369 - 15900 mRNA_7532 0.35 -0.7
507,139 - 15900 mRNA_7532 0.69 1.0
507,450 - 15900 mRNA_7532 0.83 -0.6
508,026 + -0.4
508,225 - -0.2
508,552 - 15901 mRNA_7533 0.19 -0.8
508,608 - 15901 mRNA_7533 0.20 -0.8